PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031496001
Common NameLOC100250017, VIT_06s0061g00470
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 300aa    MW: 33544.8 Da    PI: 8.3598
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031496001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-161462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W++eEd +l+ +++++G+g +W + +++ g++R++k+c++rw++yl
  GSVIVT01031496001 14 KGPWSPEEDSKLKAYIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                       79*********************************************97 PP
2Myb_DNA-binding40.46.7e-1369111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g ++ +Ed ++  +++ +G++ W+ Ia +++ gRt++++k++w++
  GSVIVT01031496001  69 GEFSDDEDRIICTLFANMGSR-WSVIATRLP-GRTDNDIKNYWNT 111
                        789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.459962IPR017930Myb domain
SuperFamilySSF466895.86E-2711109IPR009057Homeodomain-like
SMARTSM007171.1E-121364IPR001005SANT/Myb domain
PfamPF002492.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-241569IPR009057Homeodomain-like
CDDcd001676.99E-101662No hitNo description
PROSITE profilePS5129421.69363117IPR017930Myb domain
SMARTSM007171.1E-1267115IPR001005SANT/Myb domain
PfamPF002491.2E-1169111IPR001005SANT/Myb domain
CDDcd001671.93E-970113No hitNo description
Gene3DG3DSA:1.10.10.603.9E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKAYIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC TLFANMGSRW SVIATRLPGR TDNDIKNYWN TKLKKKVMGM  120
FSSSQRKLPP FPSVQNPPSP SISSSYYIPP STFPGHELPI PFPSTHLNNN TSPLTNVSLL  180
QTQETFAGPG QYYPVKDNLF MFASEASCSS SDGSGSQISF GRDIKQEEMG NFQSYIPTGF  240
EENHKFMMGY GGSNGGSPLD QYNLDQEDVK QQLISCSNGC TSSFFIDENK TQEKVMYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4493140.0AM449314.2 Vitis vinifera contig VV78X266403.66, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276209.10.0PREDICTED: transcription factor RAX2
TrEMBLA0A438C2S80.0A0A438C2S8_VITVI; Transcription factor MYB36
TrEMBLF6GW970.0F6GW97_VITVI; Uncharacterized protein
STRINGVIT_06s0061g00470.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-75myb domain protein 36