PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031388001
Common NameCBF3
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 266aa    MW: 29526.5 Da    PI: 9.3957
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031388001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2575e-1853103256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr++   ++Wv+e+r+ps+   + r++lg+f t+e+Aa+a++aa+++l+g+
  GSVIVT01031388001  53 IYRGVRQRN-ENKWVSEVREPSK---KSRIWLGTFPTPEMAARAHDAAALALRGH 103
                        69****999.7*********864...6**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.69E-1652112No hitNo description
PfamPF008477.1E-1352103IPR001471AP2/ERF domain
SMARTSM003802.5E-3053116IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-2153112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-3053112IPR001471AP2/ERF domain
PROSITE profilePS5103221.37753110IPR001471AP2/ERF domain
PRINTSPR003677.6E-85465IPR001471AP2/ERF domain
PRINTSPR003677.6E-87692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDLDRESSAS SSSPTSSPSR ANPVSSDSRC PSRCIPHKRK TGRKKFRKTR HPIYRGVRQR  60
NENKWVSEVR EPSKKSRIWL GTFPTPEMAA RAHDAAALAL RGHFASLNFP DSAWRLPRAR  120
SSSAGDVQFA AIQAAKAFQQ PPSSSSSTPF VMDNMSAGEK AGDGFRTAFV DEEAMFNMPG  180
LIDSMAEGLL LTPPAMCEGF SWDDAVSHID LSLWNHDFLF FLNVWLCHSN PFKEFTLGAF  240
MGSTKFKLEF GILCWALQVE TKGLW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.193810.0flower| inflorescence
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR2332940.0KR233294.1 Vitis vinifera C-repeat binding transcription factor (CBF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270637.11e-153PREDICTED: dehydration-responsive element-binding protein 1F
SwissprotQ9FJ938e-57DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A0P0FIF70.0A0A0P0FIF7_VITVI; C-repeat binding transcription factor
STRINGVIT_06s0061g01390.t011e-153(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.14e-35C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]