PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01031388001 | ||||||||
Common Name | CBF3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ERF | ||||||||
Protein Properties | Length: 266aa MW: 29526.5 Da PI: 9.3957 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 5e-18 | 53 | 103 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ ++Wv+e+r+ps+ + r++lg+f t+e+Aa+a++aa+++l+g+ GSVIVT01031388001 53 IYRGVRQRN-ENKWVSEVREPSK---KSRIWLGTFPTPEMAARAHDAAALALRGH 103 69****999.7*********864...6**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.69E-16 | 52 | 112 | No hit | No description |
Pfam | PF00847 | 7.1E-13 | 52 | 103 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-30 | 53 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-21 | 53 | 112 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-30 | 53 | 112 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.377 | 53 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-8 | 54 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-8 | 76 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MDLDRESSAS SSSPTSSPSR ANPVSSDSRC PSRCIPHKRK TGRKKFRKTR HPIYRGVRQR 60 NENKWVSEVR EPSKKSRIWL GTFPTPEMAA RAHDAAALAL RGHFASLNFP DSAWRLPRAR 120 SSSAGDVQFA AIQAAKAFQQ PPSSSSSTPF VMDNMSAGEK AGDGFRTAFV DEEAMFNMPG 180 LIDSMAEGLL LTPPAMCEGF SWDDAVSHID LSLWNHDFLF FLNVWLCHSN PFKEFTLGAF 240 MGSTKFKLEF GILCWALQVE TKGLW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.19381 | 0.0 | flower| inflorescence |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR233294 | 0.0 | KR233294.1 Vitis vinifera C-repeat binding transcription factor (CBF3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002270637.1 | 1e-153 | PREDICTED: dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q9FJ93 | 8e-57 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A0P0FIF7 | 0.0 | A0A0P0FIF7_VITVI; C-repeat binding transcription factor | ||||
STRING | VIT_06s0061g01390.t01 | 1e-153 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 4e-35 | C-repeat/DRE binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01031388001 |
Publications ? help Back to Top | |||
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