PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031241001
Common NameVIT_14s0060g01180, VITISV_015614
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TALE
Protein Properties Length: 311aa    MW: 34898 Da    PI: 4.7723
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031241001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.1e-092412742255
                        SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         +yp+++e+ +L++ +gL+++q+ +WF N+R ++
  GSVIVT01031241001 241 WPYPTEDEKLKLSEVTGLDQKQINNWFINQRKRH 274
                        69*****************************885 PP
2ELK38.81.9e-13194215122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK++L+rKYsgyL+sL++EF+
  GSVIVT01031241001 194 ELKEMLMRKYSGYLSSLRKEFL 215
                        9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.2E-214993IPR005540KNOX1
PfamPF037909.0E-215192IPR005540KNOX1
SMARTSM012563.5E-2897148IPR005541KNOX2
PfamPF037916.6E-25100147IPR005541KNOX2
SMARTSM011883.1E-7194215IPR005539ELK domain
PROSITE profilePS5121311.383194214IPR005539ELK domain
PfamPF037892.0E-10194215IPR005539ELK domain
PROSITE profilePS5007112.374214277IPR001356Homeobox domain
SuperFamilySSF466895.99E-19216286IPR009057Homeodomain-like
SMARTSM003891.9E-12216281IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.0E-27219279IPR009057Homeodomain-like
CDDcd000861.00E-11226278No hitNo description
PfamPF059206.4E-16234273IPR008422Homeobox KN domain
PROSITE patternPS000270252275IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDDLYRLQHE GISISGANAA AATIDFRRSV ENSNVYRFES VETEAGMSDL IKSQIVNHPR  60
YPNLVSAYIE CRKVGAPPEM ASLLEEIGRE SQPMNSRSGE IGADPELDEF MESYCEVLHR  120
YKEELSKPFD EATSFLSDIE SQLSNLCKGA LTAGTSGSYY SDEAAGTSEE ELSCGEAEVS  180
ESQESLGARP GDQELKEMLM RKYSGYLSSL RKEFLKKRKK GKLPKDARTM LLEWWNTHYR  240
WPYPTEDEKL KLSEVTGLDQ KQINNWFINQ RKRHWKPSED MRFALIDGVS GNMGGGPVFL  300
DTRGGTGSNI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209218LRKEFLKKRK
2215219KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.204040.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), but not in the endosperm. At 3 and 4 DAP, expression is restricted to the region around or just below the center of the ventral side of the embryo, where the shoot apex subsequently arises. During the transition to the shoot apex differentiation stage, expression is divided between the upper and basal regions of the shoot area, and the notch between the first leaf primordium and epiblast, respectively. When the first leaf primordia is evident, expression is localized to the notches between the shoot apical meristem (SAM) and the first leaf primordium and the putative second leaf primordium. Expressed uniformly in the inflorescence meristem, but after the transition from inflorescence to the floral phase, located specifically in the notches between the floral meristem and glume primordia. At later stages of flower development, uniformly expressed throughout the corpus of the meristem, and in the notches between glume primordia, but less well defined than in the previous stage. {ECO:0000269|PubMed:10488233}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4852761e-139AM485276.2 Vitis vinifera contig VV78X057071.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277931.20.0PREDICTED: homeobox protein knotted-1-like 1
SwissprotQ9FP291e-110KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA5C7Q80.0A5C7Q8_VITVI; Uncharacterized protein
STRINGVIT_14s0060g01180.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-84KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]