PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01031035001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | LBD | ||||||||
Protein Properties | Length: 188aa MW: 20293.1 Da PI: 8.7129 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100.9 | 1.2e-31 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +++l+++ pe+ r++++ssl+yeA+ r+ +P+yG+vg++++++++l GSVIVT01031035001 4 SCNGCRVLRKGCSDNCTIRPCLqwiktPESQANATVFLAKFYGRAGLMNLINSGPEHLRPAIFSSLLYEACGRIVNPIYGSVGLLWSGSWHL 95 6******************************************************************************************* PP DUF260 88 eqlkaelallkee 100 +q+++e++l +e+ GSVIVT01031035001 96 CQAAVEAVLKGEP 108 ******9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.219 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-25 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDNCT IRPCLQWIKT PESQANATVF LAKFYGRAGL MNLINSGPEH 60 LRPAIFSSLL YEACGRIVNP IYGSVGLLWS GSWHLCQAAV EAVLKGEPIT QITSEAAATG 120 QGPPLKAYDI RHVSKDENSA ANDLHRAKNR CRFKRSGSRL DGESPVGAAY RGGREPRDCE 180 HGVCGDG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.17322 | 0.0 | fruit| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM453811 | 1e-154 | AM453811.2 Vitis vinifera contig VV78X124981.9, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002283795.1 | 1e-115 | PREDICTED: LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 9e-88 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A5BBT8 | 1e-114 | A5BBT8_VITVI; Uncharacterized protein | ||||
STRING | VIT_14s0006g02950.t01 | 1e-114 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 4e-90 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01031035001 |