PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01030963001

Common Name

VIT_14s0006g02320

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

NF-YC

Protein Properties

Length: 130aa MW: 14306.4 Da PI: 6.871

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01030963001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	64.9	1.5e-20	1	62	38	99
NF-YC 38 misaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 misa++ +l++ka elfileltlr+w hae nkrrtl+ +di a+ + fl++i p GSVIVT01030963001 1 MISADSQILFAKASELFILELTLRAWFHAEANKRRTLQPCDIGRAIRCYPTLHFLTNIAPDV 62 8*******************************************************999865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.1E-15	1	60	IPR009072	Histone-fold
SuperFamily	SSF47113	1.36E-14	1	61	IPR009072	Histone-fold
Pfam	PF00808	1.6E-7	2	45	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MISADSQILF AKASELFILE LTLRAWFHAE ANKRRTLQPC DIGRAIRCYP TLHFLTNIAP 60 DVHKEEHSEN ISGGAGFVVA NEGVHFPAAN HELIMWNHEI PCSVQLPPIT SSEMVNKNAP 120 KRGKCDGGM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_B	8e-18	1	60	37	96	NF-YC
4awl_C	7e-18	1	60	34	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B	7e-18	1	60	34	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.4468	0.0	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:17322342}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269\|PubMed:17322342}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM478819	1e-103	AM478819.2 Vitis vinifera contig VV78X211569.3, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003633710.2	1e-93	PREDICTED: nuclear transcription factor Y subunit C-4
Swissprot	Q9FMV5	2e-20	NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBL	D7TSY6	2e-92	D7TSY6_VITVI; Uncharacterized protein
STRING	VIT_14s0006g02320.t01	4e-93	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP315	17	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	1e-22	nuclear factor Y, subunit C4

Link Out ? help Back to Top
Phytozome	GSVIVT01030963001

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Qi M, et al. QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests. Plant Biotechnol. J., 2019. 17(1): p. 252-263 [PMID:29878511]