PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01030829001 | ||||||||
Common Name | VIT_14s0006g01340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 240aa MW: 27606.9 Da PI: 8.4607 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46 | 1.2e-14 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll +++++G g W+ ++ + g++R++k+c++rw++yl GSVIVT01030829001 9 KGAWTREEDVLLRTCIEKYGEGKWHQVPFRSGLNRCRKSCRLRWLNYL 56 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 28.4 | 3.7e-09 | 62 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +Tt+E +l+++++++lG+++ + + ++ gRt +++k++w+++ GSVIVT01030829001 62 RREFTTDEVDLIIRLHRLLGNRQAPK--HQLP-GRTSNDVKNYWNTH 105 6689******************6555..7***.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.755 | 1 | 60 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-21 | 6 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.76E-22 | 7 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-12 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-13 | 9 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.15E-9 | 11 | 56 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-14 | 60 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0014 | 61 | 108 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 11.031 | 61 | 110 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.7E-7 | 62 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.26E-5 | 64 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDGPSEVRKG AWTREEDVLL RTCIEKYGEG KWHQVPFRSG LNRCRKSCRL RWLNYLRPDI 60 KRREFTTDEV DLIIRLHRLL GNRQAPKHQL PGRTSNDVKN YWNTHQSKKY FGKAGKDVAD 120 KTAKVTVINT CPRTFYKNLS YLKGKAAKES DVQSADHTLS KPYSTPPLSE DGFSWLDSLF 180 SGKEGQKEST CFRDGSANES ISSFWDEETP AATKVGETFL EEKESDWNHF SFDVDLWDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-18 | 3 | 109 | 1 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ556912 | 0.0 | FJ556912.1 Vitis vinifera R2R3 MYBA6 transcription factor splice variant 1 (MYBA6.1) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010660318.1 | 1e-171 | PREDICTED: transcription factor MYB90 | ||||
Swissprot | Q9FNV9 | 1e-51 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | D7TSQ4 | 1e-178 | D7TSQ4_VITVI; Uncharacterized protein | ||||
STRING | VIT_14s0006g01340.t01 | 1e-179 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 4e-54 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01030829001 |
Publications ? help Back to Top | |||
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