PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01030819001

Common Name

MYBA7

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

MYB

Protein Properties

Length: 241aa MW: 28164.1 Da PI: 8.1319

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01030819001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	8.9e-17	9	56	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll ++v+++G g W+ ++ + g++R++k+c++rw++yl GSVIVT01030819001 9 KGAWTSEEDHLLRKCVEKYGEGKWHQVPFRAGLNRCRKSCRLRWLNYL 56 79********************************************97 PP
2	Myb_DNA-binding	48.1	2.8e-15	62	107	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E +l +++k+lG++ W++Ia +++ gRt +++k++w+++l GSVIVT01030819001 62 RGKFTADEVDLMMRLHKLLGNR-WALIAGRLP-GRTSNDVKNYWNTHL 107 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.215	1	60	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-22	6	59	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.91E-29	6	103	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-12	8	58	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-15	9	56	IPR001005	SANT/Myb domain
CDD	cd00167	5.44E-8	11	56	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.6E-24	60	112	IPR009057	Homeodomain-like
SMART	SM00717	9.3E-14	61	109	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.192	61	111	IPR017930	Myb domain
Pfam	PF00249	9.9E-14	62	107	IPR001005	SANT/Myb domain
CDD	cd00167	2.31E-8	64	107	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MEGSLGLRKG AWTSEEDHLL RKCVEKYGEG KWHQVPFRAG LNRCRKSCRL RWLNYLKPDI 60 KRGKFTADEV DLMMRLHKLL GNRWALIAGR LPGRTSNDVK NYWNTHLRKK MVKDEVEETV 120 KINAIRPRPR TFTKNLYWLE RKELLENDQS ELHIPRKPFS TTPPSEDGLN SWWESLFSDK 180 EENKEITCSI ERSANESISC LWDEQIAAMP EVGKTSITNG QIEWTDCSFD MDHLWDLINA 240 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-24	7	111	2	105	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Function -- GeneRIF ? help Back to Top
MYBA7 role in the anthocyanin synthesis in vegetative organs [PMID: 28370629] Transcription factor responsible for the accumulation of di-hydroxylated anthocyanins in vegetative tissues of red/black and white grapevine cultivars (Vitis vinifera L.). Located in a putative color loci of chromosome 14, together with MYBA5 and MYBA6. UV-B responsive. [MYBA7] [PMID: 28370629]

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ265729	0.0	FJ265729.1 Vitis vinifera R2R3 MYB transcription factor (MYBA7) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001268002.1	1e-179	uncharacterized protein LOC100265568
Refseq	XP_010660283.1	1e-179	PREDICTED: uncharacterized protein LOC100265568 isoform X2
Refseq	XP_019080201.1	1e-179	PREDICTED: uncharacterized protein LOC100265568 isoform X1
Swissprot	Q9FNV9	3e-64	MY113_ARATH; Transcription factor MYB113
TrEMBL	B6V7D2	1e-177	B6V7D2_VITVI; R2R3 MYB transcription factor
STRING	VIT_14s0006g01280.t01	1e-176	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	1e-66	myb domain protein 113

Link Out ? help Back to Top
Phytozome	GSVIVT01030819001
Entrez Gene	100265568

Publications ? help Back to Top
Matus JT,Aquea F,Arce-Johnson P Analysis of the grape MYB R2R3 subfamily reveals expanded wine quality-related clades and conserved gene structure organization across Vitis and Arabidopsis genomes. BMC Plant Biol., 2008. 8: p. 83 [PMID:18647406] Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Matus JT, et al. A group of grapevine MYBA transcription factors located in chromosome 14 control anthocyanin synthesis in vegetative organs with different specificities compared with the berry color locus. Plant J., 2017. 91(2): p. 220-236 [PMID:28370629] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]