PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01030622001
Common NameLOC100244801, VIT_12s0059g02450
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 445aa    MW: 49719.7 Da    PI: 9.4115
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01030622001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.7e-06730126
                       --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                       ykt+lC  + r G+C++  +C+FaHg
  GSVIVT01030622001  7 YKTKLCVLYER-GHCPR-QTCSFAHG 30
                       9******9999.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.42E-5435IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-10535IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.615632IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017631IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MVERKLYKTK LCVLYERGHC PRQTCSFAHG DAELRGFSGS FNGRRDYRDD DLRDKLDRRH  60
SPPRRYSPGR GARSRPVIHG YSPSRSVGKK SDRKHRRKQQ LDGQSDFSGS LRISDGTDDR  120
LKEGKLAPSG SKNVLGEQLK QVQLDIDRLD DHKSQLKTYM EERVQEADSL TSRIQELESQ  180
LYKEREDCKR ITSKIKKFVK AHSRYLRIQD DLKRSEARLQ KLGSQLISDT SKHANEEDSS  240
IDILSDGEPT GNHVVSPKNG QQIKASPSKK RAHSNLDAEG SKPGKVAKGE GFLAGTTRSE  300
KLSRWKMQHA QLMHKKEAEV LDNGNSGSKP LTIEGKHKRG KNVSASIPLA DKLKGLESGL  360
VLPSTSMAAH AVDEVETVET EKIETVETAS REVDKVAAYE IPGLPFPPPP PPPHPRNAYS  420
QYKGEDENVD VDGIEEEMVD VDTI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.83150.0bud| cell culture| fruit| pedicel
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3841850.0FQ384185.1 Vitis vinifera clone SS0AAG32YA11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002274263.10.0PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X1
TrEMBLD7TEN80.0D7TEN8_VITVI; Uncharacterized protein
STRINGVIT_12s0059g02450.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP51641215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.17e-56C3H family protein