PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01030515001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 83aa    MW: 9351.77 Da    PI: 11.9088
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01030515001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.93.9e-211969256
                AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       +++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa+++l+g+
  GSVIVT01030515001 19 RFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARSLRGP 69
                       69*******.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.1E-141968IPR001471AP2/ERF domain
PROSITE profilePS5103223.2751976IPR001471AP2/ERF domain
CDDcd000182.09E-161976No hitNo description
SMARTSM003801.7E-351982IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-321976IPR001471AP2/ERF domain
PRINTSPR003677.4E-112031IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-232076IPR016177DNA-binding domain
PRINTSPR003677.4E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MAILVILQQE VRNQGKDVRF RGVRKRPWGR FAAEIRDPWK KTRVWLGTFD SAEDAARAYD  60
AAARSLRGPK AKTNFPGQPR AV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2119761472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.71251e-114bud| fruit| inflorescence| leaf
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4855981e-112AM485598.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X145389.17, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022969417.11e-36ethylene-responsive transcription factor 3-like
SwissprotO803391e-33ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A2I4EZ033e-34A0A2I4EZ03_JUGRE; ethylene-responsive transcription factor 3-like
STRINGXP_004140127.18e-35(Cucumis sativus)
STRINGXP_004156088.18e-35(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-26ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]