PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01030488001
Common NameVITISV_033719
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TALE
Protein Properties Length: 249aa    MW: 28330.3 Da    PI: 6.2509
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01030488001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.61.2e-091762102155
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        k +yps++++  LA+++gL+++q+ +WF N+R ++
  GSVIVT01030488001 176 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 210
                        569*****************************885 PP
2ELK408.1e-14130151122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK qLlrKYsgyLgsLkqEF+
  GSVIVT01030488001 130 ELKGQLLRKYSGYLGSLKQEFL 151
                        9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037902.1E-19135IPR005540KNOX1
SMARTSM012551.0E-13138IPR005540KNOX1
SMARTSM012561.6E-264394IPR005541KNOX2
PfamPF037911.4E-214793IPR005541KNOX2
PROSITE profilePS5121311.174130150IPR005539ELK domain
SMARTSM011881.2E-7130151IPR005539ELK domain
PfamPF037891.4E-10130151IPR005539ELK domain
PROSITE profilePS5007112.665150213IPR001356Homeobox domain
SuperFamilySSF466891.33E-19152227IPR009057Homeodomain-like
SMARTSM003899.4E-13152217IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-28155215IPR009057Homeodomain-like
CDDcd000861.37E-12162214No hitNo description
PfamPF059203.8E-17170209IPR008422Homeobox KN domain
PROSITE patternPS000270188211IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MAHPHYPRLL AAYVNCQKVG APPEVVARLE EACASEEAMG RSATSCVGED PALDQFMEAY  60
CEMLTKYEQE LTKPFKEAML FLSRIECQFK ALTVAPSDSV CGSYAGRVGS SEEEVDGNDT  120
CIDPQAEDRE LKGQLLRKYS GYLGSLKQEF LKKKKKGKLP KEARQQLLDW WSRHYKWPYP  180
SESQKLALAE STGLDQKQIN NWFINQRKRH WKPSEDMQFV VMDATHPHYY MDSVMGNPFP  240
MDCTPTLL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.295530.0inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter.
UniprotTISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4839201e-134AM483920.2 Vitis vinifera contig VV78X074180.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273805.40.0PREDICTED: homeobox protein knotted-1-like LET6 isoform X1
SwissprotP466081e-140HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA5C6E10.0A5C6E1_VITVI; Uncharacterized protein
TrEMBLF6HIE00.0F6HIE0_VITVI; Uncharacterized protein
STRINGVIT_12s0059g01190.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-127KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]