PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01030453001

Common Name

LOC100243099, VIT_12s0059g00880

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

WRKY

Protein Properties

Length: 499aa MW: 53870.9 Da PI: 7.2763

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01030453001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.7	7.5e-31	310	368	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ GSVIVT01030453001 310 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRSILITTYEGNHNHP 368 7*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.7E-34	294	370	IPR003657	WRKY domain
SuperFamily	SSF118290	5.62E-28	302	370	IPR003657	WRKY domain
PROSITE profile	PS50811	29.792	304	370	IPR003657	WRKY domain
SMART	SM00774	3.2E-37	309	369	IPR003657	WRKY domain
Pfam	PF03106	4.4E-27	311	368	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MAKGSGLSFG SDPIFFLHKP IVINSFPEDH SKRFAAMDAT KNQSTTTIQF PVNLNCAHPD 60 SPVPDDEKPR IVDEMDFFAD KNRDSKPPTT DNKNSPYYFN VNTGLHLLTA NTSSDQSMVD 120 DGMSPPNVDD KRVKNELVVL QAEIERMHAE NERLRSMLNQ VTNNYNALQV HMVALMQDQK 180 AENNEEHDQK HSGNNNGGVV VPRQFIDLGL AAKAEVEEPS LSSSEGRSGD RSGSPINNGE 240 VGSKELELRK NEKKEYSSGI GREESPDQGS QWGANKVPRL NPSKNVDQTE ATMRKARVSV 300 RARSEAPMIT DGCQWRKYGQ KMAKGNPCPR AYYRCTMAAG CPVRKQVQRC AEDRSILITT 360 YEGNHNHPLP PAAMAMASTT SSAARMLLSG SMPTPFPTNL AGPAAATPSS LLPQIFNQAL 420 YNQSNAATAA ITADPNFTAA LAAAITSIIG GAQPQPNSST NNNANTTVPT TSNSGNITTS 480 NSNSNGSNKL CNSKFPGN*

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MAKGSGLSFG SDPIFFLHKP IVINSFPEDH SKRFAAMDAT KNQSTTTIQF PVNLNCAHPD  60
SPVPDDEKPR IVDEMDFFAD KNRDSKPPTT DNKNSPYYFN VNTGLHLLTA NTSSDQSMVD  120
DGMSPPNVDD KRVKNELVVL QAEIERMHAE NERLRSMLNQ VTNNYNALQV HMVALMQDQK  180
AENNEEHDQK HSGNNNGGVV VPRQFIDLGL AAKAEVEEPS LSSSEGRSGD RSGSPINNGE  240
VGSKELELRK NEKKEYSSGI GREESPDQGS QWGANKVPRL NPSKNVDQTE ATMRKARVSV  300
RARSEAPMIT DGCQWRKYGQ KMAKGNPCPR AYYRCTMAAG CPVRKQVQRC AEDRSILITT  360
YEGNHNHPLP PAAMAMASTT SSAARMLLSG SMPTPFPTNL AGPAAATPSS LLPQIFNQAL  420
YNQSNAATAA ITADPNFTAA LAAAITSIIG GAQPQPNSST NNNANTTVPT TSNSGNITTS  480
NSNSNGSNKL CNSKFPGN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-22	296	372	1	76	WRKY transcription factor 1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269\|PubMed:12000796, ECO:0000269\|PubMed:25733771}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM446201	0.0	AM446201.2 Vitis vinifera contig VV78X255622.5, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002269696.2	0.0	PREDICTED: probable WRKY transcription factor 31
Swissprot	Q9C519	1e-108	WRKY6_ARATH; WRKY transcription factor 6
TrEMBL	F6HIC7	0.0	F6HIC7_VITVI; Uncharacterized protein
STRING	VIT_12s0059g00880.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	8e-88	WRKY family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01030453001
Entrez Gene	100243099

Publications ? help Back to Top
Zhou F, et al. High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression. Plant J., 2004. 39(6): p. 920-32 [PMID:15341634] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Chai J,Liu J,Zhou J,Xing D Mitogen-activated protein kinase 6 regulates NPR1 gene expression and activation during leaf senescence induced by salicylic acid. J. Exp. Bot., 2014. 65(22): p. 6513-28 [PMID:25210078] Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. Plant Cell, 2014. 26(12): p. 4656-79 [PMID:25549671] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Bakshi M, et al. WRKY6 restricts Piriformospora indica-stimulated and phosphate-induced root development in Arabidopsis. BMC Plant Biol., 2015. 15: p. 305 [PMID:26718529] Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development. PLoS Genet., 2016. 12(2): p. e1005833 [PMID:26829043] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116] Li H, et al. BZR1 Positively Regulates Freezing Tolerance via CBF-Dependent and CBF-Independent Pathways in Arabidopsis. Mol Plant, 2017. 10(4): p. 545-559 [PMID:28089951] Stetter MG,Benz M,Ludewig U Increased root hair density by loss of WRKY6 in Arabidopsis thaliana. PeerJ, 2017. 5: p. e2891 [PMID:28149680] Zhou X, et al. StMYB44 negatively regulates phosphate transport by suppressing expression of PHOSPHATE1 in potato. J. Exp. Bot., 2017. 68(5): p. 1265-1281 [PMID:28338870] Bakshi M, et al. Piriformospora indica Reprograms Gene Expression in Arabidopsis Phosphate Metabolism Mutants But Does Not Compensate for Phosphate Limitation. Front Microbiol, 2017. 8: p. 1262 [PMID:28747898] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486]