PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01030434001
Common NameVIT_12s0059g00700
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 427aa    MW: 46015 Da    PI: 8.3301
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01030434001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33e-173178148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WTt Ed  lv++vk++G g+W+++ +  g+ R++k+c++rw ++l
  GSVIVT01030434001 31 KGPWTTAEDAVLVEYVKRHGEGNWNSVQKNSGLSRCGKSCRLRWANHL 78
                       79******************************************9986 PP
2Myb_DNA-binding51.72e-1684127146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +g++++eE+ l+v+++++lG++ W++ a+ ++ gRt++++k++w++
  GSVIVT01030434001  84 KGAFSPEEERLIVELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 127
                        799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5042678IPR017930Myb domain
SuperFamilySSF466891.83E-3028125IPR009057Homeodomain-like
SMARTSM007174.4E-143080IPR001005SANT/Myb domain
PfamPF002497.3E-153178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-233285IPR009057Homeodomain-like
CDDcd001671.14E-103378No hitNo description
PROSITE patternPS0017504655IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.79879133IPR017930Myb domain
SMARTSM007175.0E-1683131IPR001005SANT/Myb domain
PfamPF002492.3E-1584127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2586132IPR009057Homeodomain-like
CDDcd001679.06E-1286127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009029anatomystamen
PO:0009032anatomypetal
PO:0025281anatomypollen
PO:0007016developmental stagewhole plant flowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MISNSGGGGA LSDDATSGMG GNGGANQGLK KGPWTTAEDA VLVEYVKRHG EGNWNSVQKN  60
SGLSRCGKSC RLRWANHLRP NLKKGAFSPE EERLIVELHA KLGNKWARMA AQLPGRTDNE  120
IKNYWNTRVK RRQRAGLPLY PQGVQKEALH QQQQQPVLSH SSSSMFSPFL SSPQQTKPSF  180
NPTLSLFDQV NFTTSANPIS SHANSSFLSN PSSQFKFFPN NNAGYTMPLS PVSPFQSSMS  240
SLYNHSLTPS QLLSQSPVQF NSGSFDGSFN LNQPIVGSQF HPIVAVPGMN LKLPASPSPL  300
QQTTSASSGA TGDDYMISQS TTANTYVVAQ PLSQDTSGLL DDMLKEAETL SRNENSKEEN  360
CVVQFGNAQA EDNSMAASNK GKHVLDGIVQ NGAGQHMWSA YGNRQATPEN QWADSCAAQA  420
HAGEFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-32291325107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4382480.0AM438248.2 Vitis vinifera contig VV78X118710.15, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010657205.10.0PREDICTED: transcription factor GAMYB isoform X2
TrEMBLD7TE830.0D7TE83_VITVI; Uncharacterized protein
STRINGVIT_12s0059g00700.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.12e-67myb domain protein 33