PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01030278001
Common NameVIT_08s0058g00520
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 366aa    MW: 40694.9 Da    PI: 4.0658
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01030278001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.12.5e-099382555
                AP2 25 ngkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +g r+r +lg+f taeeAa+a+++a+++++g
  GSVIVT01030278001  9 RG-RRRLWLGSFSTAEEAARAYDEAARAMYG 38
                       44.6************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.38146IPR001471AP2/ERF domain
SMARTSM003801.7E-17152IPR001471AP2/ERF domain
PfamPF008474.0E-6638IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-11947IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-171047IPR001471AP2/ERF domain
CDDcd000184.59E-191048No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009010anatomyseed
PO:0025502developmental stagefruit ripening stage
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGSCGKKSRG RRRLWLGSFS TAEEAARAYD EAARAMYGSS ARLNFPEDSQ QSVEFSQDST  60
STTTSTSPPK SIERPNKFGT SFAEESSVEP ECPVVCPKDN NSTPSDEVEV ETPMDEENCE  120
NATDTGGCYG SGNELEYFQN LLTQETYDFG QLPIVTSPSN DVEFKTPIIW QANNEELEES  180
PENSDHHGFN KGFWDLLLGG PSDIEPLNLI GTDNPALEQS GKYNFGDFSF TTMSWTGYEV  240
ETPGMKEEKK EQLEGITDYS GHHGFYDKHS HFRAFEETIN SKGSEAINTD KSWTQEGNYD  300
DDQLLLPLEG HMQFGRPSDC CPQSQNPDAQ PLRELHHIGE TDASVDYKLD SLEPESSLDF  360
NDPKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4791420.0AM479142.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X161484.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010653386.20.0PREDICTED: uncharacterized protein LOC100253373
TrEMBLD7SR620.0D7SR62_VITVI; Uncharacterized protein
STRINGVIT_08s0058g00520.t010.0(Vitis vinifera)