PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01030174001
Common NameVIT_08s0058g01390
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 332aa    MW: 37484.7 Da    PI: 6.0904
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01030174001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.85.1e-24171231259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgy+WrKYGqK++ ++++ rsYYrCt++   gC+++k+v+ ++e+p + ++tY+g+H+++
  GSVIVT01030174001 171 DDGYAWRKYGQKVILNAKHQRSYYRCTHKhdqGCMATKQVQMTEEEPPMYKTTYHGQHTCK 231
                        8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512577118No hitNo description
Gene3DG3DSA:2.20.25.804.1E-26157232IPR003657WRKY domain
SuperFamilySSF1182907.19E-25163231IPR003657WRKY domain
PROSITE profilePS5081120.335165233IPR003657WRKY domain
SMARTSM007742.1E-38170232IPR003657WRKY domain
PfamPF031067.1E-25171231IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MRESKLRGFI LLSIGSGCDH AREIKALPLD LHLVSMERHT DATMSTMECT WSEKISGDRK  60
RAIDELLRGR SFTKQLRSVL LGGDQQESAQ DLLVKISRSF TDTLSILNSG ESDEAVSQIP  120
ASGQLYSPGW HGRRSEESCE SGKSSTKDRR GCYKRRKNSQ SWIRITPNFH DDGYAWRKYG  180
QKVILNAKHQ RSYYRCTHKH DQGCMATKQV QMTEEEPPMY KTTYHGQHTC KSMLKSSQIM  240
VENSTARDSS ILLSFESNNQ DDSNAFFSSF PLIKQEEEIP NDDQELTTFE SNLGSDHGDV  300
LSGVNSSCTD STHSLDDMMM DFDDVLIGFE C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20171231969OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.27780.0bud| inflorescence| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250|UniProtKB:Q9LY00, ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:21898085}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269|PubMed:21898085}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8841980.0GQ884198.1 Vitis pseudoreticulata WRKY transcription factor (WRKY1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272504.10.0PREDICTED: probable WRKY transcription factor 70
SwissprotK4BIZ97e-43WRK70_SOLLC; WRKY DNA-binding transcription factor 70
TrEMBLF6GXW40.0F6GXW4_VITVI; Uncharacterized protein
STRINGVIT_08s0058g01390.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.17e-36WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]