PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01030047001
Common NameLOC100261403, VIT_12s0057g00560
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 485aa    MW: 54439.5 Da    PI: 5.8391
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01030047001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS443.41.5e-13512348410374
               GRAS  10 eavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                        +  +++dl +aq+l+ +l++++s +g+p+qRl ay++e+L arla+s+s++ykal+++e +   s++ l+++++++ev+P++kf+++ aN a
  GSVIVT01030047001 123 NSYDNNDLLMAQWLMDELRQMVSVSGEPIQRLGAYMLEGLVARLASSGSSIYKALRCKEPA---SADLLSYMHILYEVCPYFKFGYMSANGA 211
                        556789999***************************************************9...9*************************** PP

               GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                        I ea++ e+rvHiiDf+i+qG QW++L+qa+++Rp+gpp++RiTg+++++s   +   l+ +g+rL+++Ae+++vpfef++ +  +  +++l
  GSVIVT01030047001 212 IAEAMKDENRVHIIDFQIGQGSQWITLIQAFSARPGGPPHIRITGIDDSTSAyaRGGGLNIVGQRLSRLAESVKVPFEFHA-ADMSGCEVQL 302
                        ************************************************998899999************************.777999**** PP

               GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                        e+L  +pgEalaVn++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ F+ rfle+l+yy+a+f+s++++lpre+++ri
  GSVIVT01030047001 303 ENLGARPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETLNYYTAMFESIDVTLPREHKKRI 394
                        ******************************************************************************************** PP

               GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        +vE+++l+r++vn++aceg er+erhe l+kWr r+ +aGF+p+pls+ +++++k+ll++++++ yr+ee++g+l+lgW+dr Lv+ +aW+
  GSVIVT01030047001 395 SVEQHCLARDVVNIIACEGVERVERHELLGKWRLRFAMAGFTPYPLSSLVNATIKRLLENYSDK-YRLEEREGALYLGWMDRDLVASCAWK 484
                        **************************************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.41288465IPR005202Transcription factor GRAS
PfamPF035145.3E-133123484IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004871Molecular Functionsignal transducer activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MQASQQHRSS GMSNRLYYLP PQEAEAHCLP QFQSFDHQLC YNDGSQGTNF SFQGSSERYC  60
TLESSPNSQQ DSQSYPSDPH HSPDNTYGSP MSASCITDDV SDLKHKLREL ETVMLGPDSD  120
IINSYDNNDL LMAQWLMDEL RQMVSVSGEP IQRLGAYMLE GLVARLASSG SSIYKALRCK  180
EPASADLLSY MHILYEVCPY FKFGYMSANG AIAEAMKDEN RVHIIDFQIG QGSQWITLIQ  240
AFSARPGGPP HIRITGIDDS TSAYARGGGL NIVGQRLSRL AESVKVPFEF HAADMSGCEV  300
QLENLGARPG EALAVNFAFM LHHMPDESVS TQNHRDRLLR LVKSLSPKVV TLVEQESNTN  360
TAAFFPRFLE TLNYYTAMFE SIDVTLPREH KKRISVEQHC LARDVVNIIA CEGVERVERH  420
ELLGKWRLRF AMAGFTPYPL SSLVNATIKR LLENYSDKYR LEEREGALYL GWMDRDLVAS  480
CAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-5713748426375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.118310.0fruit
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4809330.0AM480933.2 Vitis vinifera contig VV78X168671.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272334.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_010657429.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_010657430.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_019079174.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLF6HHL90.0F6HHL9_VITVI; Uncharacterized protein
STRINGVIT_12s0057g00560.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP14091447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]