PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01030046001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 365aa    MW: 40822 Da    PI: 5.2848
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01030046001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.3e-3167124260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        +DgynWrKYGqK+vkg+ef rsYYrCt+++C+vkk++ers+ d+++++i+Y g+H+h+k
  GSVIVT01030046001  67 EDGYNWRKYGQKHVKGNEFIRSYYRCTHPNCQVKKQLERSH-DGQITDIIYFGKHDHPK 124
                        7****************************************.***************85 PP

2WRKY106.61.3e-33241299159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dgy+WrKYGqK vkg+++prsYYrC+ agCpvkk+ver+++dpk+v++tYeg+H+h+
  GSVIVT01030046001 241 VNDGYRWRKYGQKLVKGNTNPRSYYRCSNAGCPVKKHVERASHDPKMVITTYEGQHDHD 299
                        58********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-2758124IPR003657WRKY domain
PROSITE profilePS5081121.03561125IPR003657WRKY domain
SuperFamilySSF1182901.16E-2463124IPR003657WRKY domain
SMARTSM007741.2E-3466124IPR003657WRKY domain
PfamPF031066.7E-2467123IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-36227301IPR003657WRKY domain
SuperFamilySSF1182907.72E-30233301IPR003657WRKY domain
PROSITE profilePS5081135.313236301IPR003657WRKY domain
SMARTSM007741.2E-38241300IPR003657WRKY domain
PfamPF031068.2E-27242298IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MKVPTTSDFG TLVQVQDQFE WQSFTYDLND VDSNKLQQRQ IPDTGVHASQ SHQEAIMPSI  60
IPEKASEDGY NWRKYGQKHV KGNEFIRSYY RCTHPNCQVK KQLERSHDGQ ITDIIYFGKH  120
DHPKLQVDLP LAVGLVVPVQ EERPKEPSST VVEEKSLDGD GQTSCQIEPV DAPQPAIAVS  180
DDCVDRALAV WSRTRDETDN DDDPDSKRQK KDINNVDATP TDKPSGEPRI VVQTVSEVDI  240
VNDGYRWRKY GQKLVKGNTN PRSYYRCSNA GCPVKKHVER ASHDPKMVIT TYEGQHDHDM  300
PPARTVTHNS AGPNTTTTDV NDESRAKSEQ SDNVGLAIVP YICLGPENNK SNDQQTPSAE  360
PVQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-3668303276WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.118310.0fruit
Vvi.19540.0fruit| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4809330.0AM480933.2 Vitis vinifera contig VV78X168671.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272407.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
RefseqXP_010657427.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV08e-91WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLF6HHL80.0F6HHL8_VITVI; Uncharacterized protein
STRINGVIT_12s0057g00550.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-87WRKY family protein