PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01029979001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | LBD | ||||||||
Protein Properties | Length: 259aa MW: 27863.7 Da PI: 6.2252 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126 | 1.8e-39 | 34 | 135 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ GSVIVT01029979001 34 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQ 125 7***********************9989**************************************************************** PP DUF260 92 aelallkeel 101 aela+++++l GSVIVT01029979001 126 AELAMVQAQL 135 ******9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.81 | 33 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.9E-39 | 34 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MIFSCLVGVG KRPTGMVEDV VEAVAVTSLS PAAPCGACKF LRRKCVSGCI FAPHFGSDQG 60 AARFAAVHKV FGASNVSKLL LHIPVNRRHD AVVTISYEAQ ARLSDPVYGC VSTILALQQQ 120 VASLQAELAM VQAQLINSRF AVANAFQNSQ QQQQHQIAVL QPAYSNNSTA SNNLINVGSF 180 TSNFDIASET APSSHSLEPL QLSQPSQDED EDEEESQNPV IVLSCIKDNS KILSLERITR 240 MCLLFPIPTF SLSYSTMC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-37 | 25 | 141 | 2 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-37 | 25 | 141 | 2 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM430534 | 0.0 | AM430534.1 Vitis vinifera contig VV78X033883.8, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002271115.1 | 1e-154 | PREDICTED: LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 8e-79 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | F6HMP4 | 1e-153 | F6HMP4_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0056g01650.t01 | 1e-154 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 2e-62 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01029979001 |