PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01029941001
Common NameVIT_08s0056g01190
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 447aa    MW: 49340.8 Da    PI: 6.1627
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01029941001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-17143188147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg W + Ed +l +av+q+G+ +W++Ia+++  gR++k+c++rw++ 
  GSVIVT01029941001 143 RGHWRPHEDAKLREAVAQHGPQNWNLIAEKLV-GRSGKSCRLRWFNQ 188
                        899*****************************.***********996 PP
2Myb_DNA-binding48.61.9e-15195238146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        r +++ eE+++l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
  GSVIVT01029941001 195 RRAFSGEEEDRLLAAHRLYGNK-WAMIARAFP-GRTDNAVKNHWHV 238
                        568999****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.932138193IPR017930Myb domain
SuperFamilySSF466893.48E-27142236IPR009057Homeodomain-like
SMARTSM007174.0E-14142191IPR001005SANT/Myb domain
PfamPF002494.1E-16143188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-25144196IPR009057Homeodomain-like
CDDcd001672.36E-13146187No hitNo description
PROSITE profilePS5129419.925194244IPR017930Myb domain
SMARTSM007171.7E-13194242IPR001005SANT/Myb domain
PfamPF002493.6E-12195237IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-19197242IPR009057Homeodomain-like
CDDcd001671.99E-10197237No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MYIFFFLFCQ IVLVALWYKW FPLIFLHFLS SSSFLGSSEF VVTMSLVENP SGGGGNSDVM  60
LSLSSGYSEE NEFMGSDKGG EILTPHPLEG EENDRSVEGS DGCFGDEKME EVNGFGPGEE  120
EEGEDSEQNS GEVKSGQNKV CVRGHWRPHE DAKLREAVAQ HGPQNWNLIA EKLVGRSGKS  180
CRLRWFNQLD PRINRRAFSG EEEDRLLAAH RLYGNKWAMI ARAFPGRTDN AVKNHWHVIM  240
ARRHRAQSSI YRRRKPSFSS SASSPFSQTL LPRGLDMIMT HPNSSQTIPM GLSIINHPSY  300
SPSYSSHLIT HQPIPRGLDV VTHQNNAGSE STITSTIDES ASSGTDLSLK AYSNRADLPG  360
IFTNYTPAMQ QQLHLIGLDL QMGLPGVYEK PNGLYRAGNS DSNSEASATS AANTRNNHYL  420
HGENENGNGN KDYNTPFIDF LGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-301422436107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.184040.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4839720.0AM483972.2 Vitis vinifera contig VV78X228068.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010653173.10.0PREDICTED: transcription factor MYB44
TrEMBLD7TL380.0D7TL38_VITVI; Uncharacterized protein
STRINGVIT_08s0056g01190.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-65myb domain protein 105