PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01029824001
Common NameLOC100265598, VIT_08s0056g00050
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 665aa    MW: 72033.2 Da    PI: 6.4393
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01029824001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.27e-1282936482374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         +lLl+cAeavs++++e+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y++lp+ + s    ++ ++a+++f+ +sP++kf
  GSVIVT01029824001 293 LTLLLQCAEAVSADNFEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYATLPTVPHS----QKLVSAFQVFNGISPFVKF 380
                        579*************************************************************99996....899999************* PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                        sh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fAe+lg+pfef + va++
  GSVIVT01029824001 381 SHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGT----SMEALEATGKRLTDFAEKLGLPFEFFP-VAEK 467
                        ********************************************************....***************************.7*** PP

               GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                        + +l++e+L+v+++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a++++
  GSVIVT01029824001 468 VGNLDPERLNVSKREAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGASYGE 552
                        **********************9..999999999999....**********************.899************************* PP

               GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                        ese+r+ vE++ll+rei+nv+a  g +r  + + +++Wre+l+++GF+ v+l  +aa+qa lll +++sdgy++ e++g+l lgWkd  L++
  GSVIVT01029824001 553 ESEQRHAVEQQLLSREIRNVLAVGGPSRSGDVK-FNNWREKLQQSGFRVVSLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLT 643
                        ***************************888877.********************************************************** PP

               GRAS 370 vSaWr 374
                        +SaWr
  GSVIVT01029824001 644 ASAWR 648
                        ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.797266628IPR005202Transcription factor GRAS
PfamPF035142.4E-125293648IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MAAACALLGD NGREMDANGS AGASLTPLTS TSISSGCDQL NHHFQRAKMV RKRTASEVEL  60
QTGSYHRFSR RPITAMNPNP LHDMGGGGSS LSFPSNNISS RDDNSNSNSA TPNSTHVPNH  120
STISPCSTNS TVTSSTNLAY IDTLAPLPQP PAVCGFSGLP LFPPERNRNT SGTLASAAFL  180
PAPAVPPLTP PSMEDTTATA WIDGILKDLI HSSTNVPIPQ LIQNVREIIH PCNPNLASIL  240
EYRLRSLTDP NPIPNYPERR RKDGPPVAQH LSDHQASPSS VAPVLDEEGL HLLTLLLQCA  300
EAVSADNFEE ANKMLLEISE LSTPFGTSAQ RVAAYFSEAM SARLVSSCLG IYATLPTVPH  360
SQKLVSAFQV FNGISPFVKF SHFTANQAIQ EAFEREERVH IIDLDIMQGL QWPGLFHILA  420
SRPGGPPFVR LTGLGTSMEA LEATGKRLTD FAEKLGLPFE FFPVAEKVGN LDPERLNVSK  480
REAVAVHWLQ HSLYDVTGSD TNTLWLLQRL APKVVTVVEQ DLSHAGSFLG RFVEAIHYYS  540
ALFDSLGASY GEESEQRHAV EQQLLSREIR NVLAVGGPSR SGDVKFNNWR EKLQQSGFRV  600
VSLAGNAATQ ATLLLGMFPS DGYTLVEDNG TLKLGWKDLC LLTASAWRPF HAAATTTPTH  660
HYAH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.028664913380Protein SCARECROW
5b3h_A0.028664912379Protein SCARECROW
5b3h_D0.028664912379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoot apical meristem, leaf primordia, between the cortex and the differentiating vessels in lower shoots and in root endodermis. {ECO:0000269|PubMed:11333309}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4495600.0AM449560.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X224115.6, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028085361.10.0protein SCARECROW-like
SwissprotQ9AVK40.0SCR_PEA; Protein SCARECROW
TrEMBLF6HMQ20.0F6HMQ2_VITVI; Uncharacterized protein
STRINGVIT_08s0056g00050.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP21831437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein