PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01029688001 | ||||||||
Common Name | LOC100264153, VIT_12s0055g00340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | WRKY | ||||||||
Protein Properties | Length: 491aa MW: 53986.8 Da PI: 4.877 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.9 | 2.7e-30 | 231 | 290 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ GSVIVT01029688001 231 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 290 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-32 | 216 | 292 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.27E-27 | 224 | 292 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.988 | 226 | 292 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-37 | 231 | 291 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-27 | 232 | 290 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MREGRPMEID LSLKIDDEGE GDGEGEEEAE GEEGDEQVQR EDQQKEKETG HVEDKGEDVE 60 AASSVEENLK TEELCVLQME MNRMKEENKV LRKVVEETMK DYRDLQMKFA LIQQNKQNKD 120 LQISLSLHGK DRNLQDPRRI SKVLNINDQI LPSSPEDNEE SELGLSLRLK PNTREEREED 180 GEANKEETVS FTPIPNRLPR TDLAAIKSHA ASPPNRKARV SVRARCQTAT MNDGCQWRKY 240 GQKIAKGNPC PRAYYRCTVA PGCPVRKQVQ RCLEDMSILI TTYEGTHNHP LPVGATAMAS 300 TTSAAASFML VDSSNPLSEA SLSYPNSHFI NPGSSSSMIR SINPNDPSKG IVLDLTNTTP 360 SDPQQFPLQS SSHSSAQLGF SWMPSKPSYH SGGSTNIANN LFPNPRAAEE DRSIAENVTA 420 ITSNPDFRVA VAAAITSFIN KESHTSTHTT GPPFANPRDG EGGGGSSGNN WVLESLPANP 480 SIFFFHFSNG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-22 | 218 | 294 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM472769 | 0.0 | AM472769.2 Vitis vinifera contig VV78X277460.7, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010657556.1 | 0.0 | PREDICTED: probable WRKY transcription factor 9 | ||||
TrEMBL | F6H1R3 | 0.0 | F6H1R3_VITVI; Uncharacterized protein | ||||
STRING | VIT_12s0055g00340.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 8e-79 | WRKY DNA-binding protein 9 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01029688001 |
Entrez Gene | 100264153 |