PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01029593001
Common NameLOC100251358, VIT_09s0054g00440
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GATA
Protein Properties Length: 245aa    MW: 26666.9 Da    PI: 8.6425
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01029593001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.51.4e-16165201135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  GSVIVT01029593001 165 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 201
                        *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009798.9E-122560IPR010399Tify domain
PROSITE profilePS5132014.8462560IPR010399Tify domain
PfamPF062001.2E-132859IPR010399Tify domain
PROSITE profilePS5101713.20591133IPR010402CCT domain
PfamPF062034.6E-1691133IPR010402CCT domain
SMARTSM004013.7E-13159212IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.748159207IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-12161210No hitNo description
Gene3DG3DSA:3.30.50.104.8E-16163206IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.41E-15164219No hitNo description
PfamPF003201.5E-14165201IPR000679Zinc finger, GATA-type
PROSITE patternPS003440165192IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEGDVQADPG NLADSRGALT VQPGGSDNQN QLTLSFQGQV YVFDSVSPEK VQAVLLLLGG  60
REVPPTMPAL SIAGHNRELP GTPQRYNVPH RLASLIRFRE KRKERNFDKK IRYTVRKEVA  120
LRMQRNKGQF TSSKSNHDDS ASTTPGWESS WGMAGNGPIN QEIVCRHCGI SEKSTPMMRR  180
GPEGPRTLCN ACGLMWANKG TLRDLSKAAP EAGQSPSLNQ TGENGNFETD QMVLGMAENV  240
SDQA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.124310.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3931690.0FQ393169.1 Vitis vinifera clone SS0AFA2YF05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263707.10.0PREDICTED: GATA transcription factor 24
RefseqXP_010655300.10.0PREDICTED: GATA transcription factor 24
RefseqXP_010655302.10.0PREDICTED: GATA transcription factor 24
SwissprotQ8H1G01e-104GAT28_ARATH; GATA transcription factor 28
TrEMBLF6GYN70.0F6GYN7_VITVI; Uncharacterized protein
STRINGVIT_09s0054g00440.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-107ZIM-LIKE 2