PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01029458001

Common Name

VIT_09s0054g01620

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

G2-like

Protein Properties

Length: 463aa MW: 50654.2 Da PI: 5.8246

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01029458001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.8	2.1e-32	236	290	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHerF+eav++L G+ekAtPk +l+lm+++gLt++hvkSHLQkYRl GSVIVT01029458001 236 KPRMRWTPELHERFLEAVNKLEGAEKATPKGVLKLMNIEGLTIYHVKSHLQKYRL 290 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.998	233	293	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-30	234	291	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.73E-18	235	290	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-24	236	291	IPR006447	Myb domain, plants
Pfam	PF00249	7.7E-10	238	289	IPR001005	SANT/Myb domain
Pfam	PF14379	3.9E-22	326	373	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MNHHSVLSAK QTESTKGFTQ SYCAAVSPIH NLLNVELEVQ PQKLCSKSGP YSSVSSDTDA 60 QYPKCTFSRS SVFCTSLYLS SSSSTETHRP LGNLPFLPHP SMSYQSISAV HSTKTPFLSG 120 DSSGLYDEGN SEDMMKGFLN LSSDASDESF HVMNCASDNI TFSEQLELQF LSDELDIAIA 180 DNGENPRLDE IYEMPQDSST PAMALGLTVN QNHQSVAPST DASSGQPSPG AAAAHKPRMR 240 WTPELHERFL EAVNKLEGAE KATPKGVLKL MNIEGLTIYH VKSHLQKYRL AKYMPERKED 300 KKASGSEEKK AASSNNESDG RRKGNIQITE ALRLQMEVQK QLHEQLEVQR TLQLRIEEHA 360 RYLHKILEEQ QKAGSALISP PSLSSPTSPH PDSERQPSSP SATTTLPQPA ECKADSSSPP 420 PSKHKAATET TDSEQQACSK RSRLESNPEP VSDEAVVENP SQ*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MNHHSVLSAK QTESTKGFTQ SYCAAVSPIH NLLNVELEVQ PQKLCSKSGP YSSVSSDTDA  60
QYPKCTFSRS SVFCTSLYLS SSSSTETHRP LGNLPFLPHP SMSYQSISAV HSTKTPFLSG  120
DSSGLYDEGN SEDMMKGFLN LSSDASDESF HVMNCASDNI TFSEQLELQF LSDELDIAIA  180
DNGENPRLDE IYEMPQDSST PAMALGLTVN QNHQSVAPST DASSGQPSPG AAAAHKPRMR  240
WTPELHERFL EAVNKLEGAE KATPKGVLKL MNIEGLTIYH VKSHLQKYRL AKYMPERKED  300
KKASGSEEKK AASSNNESDG RRKGNIQITE ALRLQMEVQK QLHEQLEVQR TLQLRIEEHA  360
RYLHKILEEQ QKAGSALISP PSLSSPTSPH PDSERQPSSP SATTTLPQPA ECKADSSSPP  420
PSKHKAATET TDSEQQACSK RSRLESNPEP VSDEAVVENP SQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-26	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-26	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-26	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-26	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-26	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-26	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-26	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-26	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.19037	0.0	cell culture\| inflorescence

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM482967	0.0	AM482967.2 Vitis vinifera contig VV78X044419.13, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002269813.2	0.0	PREDICTED: myb family transcription factor PHL6
Refseq	XP_010655230.1	0.0	PREDICTED: myb family transcription factor PHL6
Swissprot	Q949U2	1e-136	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	F6GYI0	0.0	F6GYI0_VITVI; Uncharacterized protein
STRING	VIT_09s0054g01620.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-105	G2-like family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01029458001

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]