PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01029396001 | ||||||||
Common Name | VIT_17s0053g00780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 675aa MW: 74786.9 Da PI: 6.5973 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.8 | 2.2e-19 | 27 | 82 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le +F+++++p++++r +L+++l L rq+k+WFqNrR+++k GSVIVT01029396001 27 KKRYHRHTAHQIQRLEGMFKECPHPDEKQRLQLSRELALAPRQIKFWFQNRRTQMK 82 678899***********************************************998 PP | |||||||
2 | START | 182.3 | 2.7e-57 | 226 | 450 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 +a a++el+++ + +ep+W+ks + +n + + ++f+++++ ++ea+r+sgvv+m++ lv +++d++ +W e ++ a GSVIVT01029396001 226 VAGNALDELLRLLQTNEPLWMKSTtdgrDVLNLESYERIFPRANShlknpnVRIEASRDSGVVIMNSLALVDIFMDSN-KWMELFPtivsMA 316 678899*******************99999**********99999******9**************************.***9999999899 PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164 tlev+ssg g lqlm+ elq+ls lvp R+f+f+Ry++q ++g+w+ivdvS d +++++ ++ +++lpSg+li++++ng+skv GSVIVT01029396001 317 RTLEVLSSGmmggqsGSLQLMYGELQVLSSLVPtREFYFLRYCQQIEQGSWAIVDVSYDFPRDNQ-FAPQNPSHRLPSGCLIQDMPNGYSKV 407 ****************************************************************9.788888999***************** PP EEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 165 twvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 twvehv+ ++++p h l+r l+++gla+ga +w+atlqr ce+ GSVIVT01029396001 408 TWVEHVEIEDKTPtHRLYRDLIHRGLAFGAERWLATLQRMCER 450 *****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-22 | 15 | 86 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.24E-19 | 19 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.508 | 24 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.0E-17 | 25 | 88 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.25E-17 | 26 | 85 | No hit | No description |
Pfam | PF00046 | 5.2E-17 | 27 | 82 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 59 | 82 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 50.16 | 216 | 453 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.54E-36 | 217 | 451 | No hit | No description |
CDD | cd08875 | 4.66E-119 | 220 | 449 | No hit | No description |
SMART | SM00234 | 4.9E-48 | 225 | 450 | IPR002913 | START domain |
Pfam | PF01852 | 1.2E-49 | 226 | 450 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.7E-6 | 279 | 445 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 7.61E-23 | 471 | 645 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 675 aa Download sequence Send to blast |
MEYGSGGGGG GSGGSGGDPD GSDSRRKKRY HRHTAHQIQR LEGMFKECPH PDEKQRLQLS 60 RELALAPRQI KFWFQNRRTQ MKAQHERADN CALRVENDKI RCENIAIREA LKNVICPSCG 120 GPPIGEDSYF DEQKLRVENA QLKEELDRVS SIAAKYIGRP ISQLPPVQPV HISSLDLSMG 180 SFGGQGMGSG PSLDLDLLPG SSSAMPILPF QGTGISDMDK SLMADVAGNA LDELLRLLQT 240 NEPLWMKSTT DGRDVLNLES YERIFPRANS HLKNPNVRIE ASRDSGVVIM NSLALVDIFM 300 DSNKWMELFP TIVSMARTLE VLSSGMMGGQ SGSLQLMYGE LQVLSSLVPT REFYFLRYCQ 360 QIEQGSWAIV DVSYDFPRDN QFAPQNPSHR LPSGCLIQDM PNGYSKVTWV EHVEIEDKTP 420 THRLYRDLIH RGLAFGAERW LATLQRMCER FACLMVKGTS TRDLGGVIPS PDGKRSMMKL 480 AQRMVNNFCA SISTSNGHRW TTLSGLNEVG VRVTIHKNTD PGQPNGVVLS AATTIWLPVS 540 PQNVFNFFRD ERTRPQWDVL SNGNAVQEVA HIANGPHPGN CISVLRAFNT SQNNMLILQE 600 SCIDSSGSLV IYCPVDLPAI NIAMSGEDPS YIPLLPSGFT ISPDGRLDQG DGATQQEHRM 660 VRVLTCVDEH HFYL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.11188 | 0.0 | cell culture| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During embryo development, expressed in all cells at the 4- and 16-cell embryo stages. Expression is restricted to the protoderm from the globular stage onward. {ECO:0000269|PubMed:25564655}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in apical meristems and young epidermal tissue including trichomes and stipules. Expressed in lateral root tips, the L1 layer of apical inflorescence meristems and early flower primordia, carpel and petal epidermis, stigma papillae, ovule primordia, nucellus and embryo. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM467170 | 0.0 | AM467170.2 Vitis vinifera contig VV78X070764.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002271012.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11 isoform X2 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | F6HVV0 | 0.0 | F6HVV0_VITVI; Uncharacterized protein | ||||
STRING | VIT_17s0053g00780.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01029396001 |