PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01029392001

Common Name

LOC100266514, VIT_17s0053g00740

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

NAC

Protein Properties

Length: 239aa MW: 27340.6 Da PI: 4.622

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01029392001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.2	4.6e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd+ GSVIVT01029392001 6 LPPGFRFHPTDEELVNYYLKRKIHGQEIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDR 96 79**************************.99**********84335556888****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v++ +++++g+kktLv+y+grap+g +tdWvmheyrl GSVIVT01029392001 97 RVTC-QSRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 133 .999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.5E-64	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.035	6	156	IPR003441	NAC domain
Pfam	PF02365	2.7E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKIHG QEIELDIIPE VDLYKCEPWE LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVTC QSRAIGMKKT LVYYRGRAPQ 120 GIRTDWVMHE YRLDDKECEE TSGIQDSYAL CRVFKKNGIC SESEEQGQCS SSLIESSQGV 180 LNDYETMSPD VPLPSSSCME EEDKDDSWMQ FITDDAWCSS NTIMGGADEV SCPPAFTN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-55	2	157	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269\|PubMed:25081480}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00363	DAP	Transfer from AT3G17730	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM461696	1e-158	AM461696.2 Vitis vinifera contig VV78X168073.5, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010663931.1	1e-180	PREDICTED: NAC domain-containing protein 86 isoform X2
Swissprot	Q9FFI5	1e-90	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	D7TXS5	1e-179	D7TXS5_VITVI; Uncharacterized protein
STRING	VIT_17s0053g00740.t01	1e-179	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-127	NAC domain containing protein 57

Link Out ? help Back to Top
Phytozome	GSVIVT01029392001
Entrez Gene	100266514

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]