PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01029145001
Common NameVIT_11s0052g01490
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 366aa    MW: 41152.2 Da    PI: 6.4054
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01029145001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-161463148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg.kgRtlkqcksrwqkyl 48
                       +g+W++eEd +l+ +++q+G+g +W + ++++g ++R++k+c++rw++yl
  GSVIVT01029145001 14 KGPWSPEEDAKLKTYIEQYGTGgNWIALPQKIGrLKRCGKSCRLRWLNYL 63
                       79**********************************************97 PP
2Myb_DNA-binding39.11.7e-1270112246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g +++eEd ++ ++    G++ W+ Ia+ ++ gRt++++k++w++
  GSVIVT01029145001  70 GGFSEEEDSIICNLYISIGSR-WSVIAAQLP-GRTDNDIKNYWNT 112
                        569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.821963IPR017930Myb domain
SuperFamilySSF466892.03E-2511110IPR009057Homeodomain-like
SMARTSM007175.7E-131365IPR001005SANT/Myb domain
PfamPF002493.8E-151463IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-241570IPR009057Homeodomain-like
CDDcd001676.26E-101663No hitNo description
PROSITE profilePS5129420.54364118IPR017930Myb domain
SMARTSM007173.2E-1168116IPR001005SANT/Myb domain
PfamPF002497.7E-1170112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2371118IPR009057Homeodomain-like
CDDcd001673.20E-872112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007520developmental stageroot development stage
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKTYIE QYGTGGNWIA LPQKIGRLKR CGKSCRLRWL  60
NYLRPNIKHG GFSEEEDSII CNLYISIGSR WSVIAAQLPG RTDNDIKNYW NTRLKKKLLG  120
KRKQSHFNRL SVAGQDPKDA TGVEDNPYSQ ALSNSALERL QLHMQLQSLQ HPFAFYNNPA  180
LWPKLHPLQE KLIQNLQNEL PSPLMQHTPP SSDPMGQEQK SGFYEPPTAS ITLQQEYPKT  240
NNPKGDEFEK SLNVLPSSDS SMAYNSENMV GAPIMSKPDG VDQSNIAQQA VSTFQAELDD  300
FLNNKMVGFL PQEEQMTEID GSKDSLAWWS NDFDTKSASS HSWDSTSVIQ SEGMFQDYVL  360
GYNLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24141187108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In roots, expressed in endodermal cells from the late elongation zones to the differentiation zone and, to a lower extent, in endodermal cells of the meristematic zone. {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
UniprotTISSUE SPECIFICITY: Expressed in leaves, roots (endodermis-specific) and seedlings. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322, ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4320890.0AM432089.2 Vitis vinifera contig VV78X095327.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270766.10.0PREDICTED: transcription factor MYB36
RefseqXP_019078519.10.0PREDICTED: transcription factor MYB36
SwissprotQ9FKL21e-101MYB36_ARATH; Transcription factor MYB36
TrEMBLD7SQ560.0D7SQ56_VITVI; Uncharacterized protein
STRINGVIT_11s0052g01490.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-86myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]