PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028981001
Common NameLOC100253919, VIT_16s0050g00070
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 270aa    MW: 30230.1 Da    PI: 9.8247
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028981001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.14.6e-191461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT+eEde+l+d++k+ G g+W++ +++ g+ R++k+c++rw +yl
  GSVIVT01028981001 14 RGAWTPEEDEILIDYIKKNGHGRWRSLPKHAGLLRCGKSCRLRWTNYL 61
                       89******************************99************97 PP
2Myb_DNA-binding56.46.8e-1867112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++T+eE+  +++++ +lG++ W++Ia++++ gRt++++k++w+++l
  GSVIVT01028981001  67 RGPFTPEEETAIIQLHSMLGNR-WAAIASKIP-GRTDNEIKNFWNTHL 112
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-26564IPR009057Homeodomain-like
PROSITE profilePS5129419.184961IPR017930Myb domain
SuperFamilySSF466894.03E-3111108IPR009057Homeodomain-like
SMARTSM007172.1E-151363IPR001005SANT/Myb domain
PfamPF002494.8E-171461IPR001005SANT/Myb domain
CDDcd001678.23E-131661No hitNo description
PROSITE profilePS5129426.52662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2765116IPR009057Homeodomain-like
SMARTSM007178.8E-1866114IPR001005SANT/Myb domain
PfamPF002496.7E-1767112IPR001005SANT/Myb domain
CDDcd001674.68E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRKPCCDKH GVKRGAWTPE EDEILIDYIK KNGHGRWRSL PKHAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF TPEEETAIIQ LHSMLGNRWA AIASKIPGRT DNEIKNFWNT HLKKRLLGNH  120
QNQQTQVEAE ARLSMESLLL RPASMSKNDS DYFLRIWNSE VGDSFRKKNG QYGVACQSPI  180
SSLSTKFRSG SSLTMQRGPA GTSTSTSTTI TSKQKNMEPK SHTAYAQDMM TGSDDSSSYE  240
LGYSSDISFR LLLDFQGDND MGFLQGLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-281411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}.
UniprotTISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4866530.0AM486653.2 Vitis vinifera contig VV78X000436.15, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002267986.10.0PREDICTED: transcription repressor MYB6
SwissprotQ9M2D93e-87MYB17_ARATH; Transcription factor MYB17
TrEMBLF6H6Q10.0F6H6Q1_VITVI; Uncharacterized protein
STRINGVIT_16s0050g00070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.12e-87myb domain protein 17