PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01028823001 | ||||||||
Common Name | VIT_16s0050g01480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | WRKY | ||||||||
Protein Properties | Length: 183aa MW: 20505.6 Da PI: 5.1017 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 84.9 | 7.2e-27 | 11 | 69 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC++ C+++k+ve s+++p+ ++ Y g+H h GSVIVT01028823001 11 RDSWSWRKYGQKPIKGSPYPRNYYRCSTLkACSARKQVELSQDNPEEYIVSYIGDHIHA 69 79************************99889**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 27.6 | 5 | 71 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.7E-27 | 6 | 71 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-24 | 7 | 71 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.2E-30 | 10 | 70 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.6E-23 | 12 | 68 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009010 | anatomy | seed | ||||
PO:0025501 | developmental stage | fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MMRINAKTLS RDSWSWRKYG QKPIKGSPYP RNYYRCSTLK ACSARKQVEL SQDNPEEYIV 60 SYIGDHIHAR PTTRRSLAGT ARNPPPAAPT SVTDLSPTTP LTAHYNNKTQ KPDTENENEN 120 SEPMFEDEEE EEEEADILTT NMQMSEETFM AMHVLNSRDS QPTIAEPHSP AKNSINAAGS 180 SD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-15 | 9 | 71 | 16 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-15 | 9 | 71 | 16 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM458193 | 0.0 | AM458193.1 Vitis vinifera contig VV78X207471.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010662789.1 | 1e-133 | PREDICTED: WRKY transcription factor 22 | ||||
Swissprot | Q9FLX8 | 3e-33 | WRK27_ARATH; Probable WRKY transcription factor 27 | ||||
TrEMBL | E0CUS7 | 1e-133 | E0CUS7_VITVI; Uncharacterized protein | ||||
STRING | VIT_16s0050g01480.t01 | 1e-134 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 4e-35 | WRKY DNA-binding protein 27 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01028823001 |
Publications ? help Back to Top | |||
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