PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028718001
Common NameLOC100256922, VIT_16s0050g02510
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 365aa    MW: 40043.4 Da    PI: 5.4175
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028718001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.3e-30133194159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDg++WrKYGqK++ g+++prsYY+Ct++   gC ++k+v+rs++dp+++eitY+g+H+++
  GSVIVT01028718001 133 LDDGFSWRKYGQKDILGAKYPRSYYKCTHRnaqGCLATKQVQRSDDDPTIFEITYRGRHTCT 194
                        59***************************98899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.353128191IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-29130195IPR003657WRKY domain
SuperFamilySSF1182902.88E-26131195IPR003657WRKY domain
SMARTSM007744.5E-43133195IPR003657WRKY domain
PfamPF031061.6E-27134193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MENMGSWEQK NLINELTNGR ELAKQLQIHL SVSSSSHDAR ESLVQKILTS YEKALSLLRC  60
SGPVGEPQAA AAGGGGAIGI GMSESPRSLS GSPRSEDSDK EQEHKDGSRK RKTLPRWTKQ  120
VQMSLGPGPE GPLDDGFSWR KYGQKDILGA KYPRSYYKCT HRNAQGCLAT KQVQRSDDDP  180
TIFEITYRGR HTCTQVSQQI PPPAALPGNQ GLMDSKDHQQ FNLQPQQNQQ QAQDMLLSFQ  240
SGLRVVTEGL DTPSDQAFPP FCFTSTSNIK VEEPGFSPSM MDNNIVGNFP TSFVSPAASR  300
SNYFSMSSDE MNSLGGNQNL QAPEANLNEI ISAAASTTNP QFEQFPFGSM EFDPNFNFDH  360
LGFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-21133193868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107112SRKRKT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.84810.0pedicel
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0364630.0KT036463.1 Vitis vinifera cultivar Vidal Blanc WRKY30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002267793.20.0PREDICTED: probable WRKY transcription factor 53
TrEMBLE0CUJ80.0E0CUJ8_VITVI; Uncharacterized protein
STRINGVIT_16s0050g02510.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.13e-54WRKY family protein