PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01028718001 | ||||||||
Common Name | LOC100256922, VIT_16s0050g02510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | WRKY | ||||||||
Protein Properties | Length: 365aa MW: 40043.4 Da PI: 5.4175 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.6 | 3.3e-30 | 133 | 194 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g+++prsYY+Ct++ gC ++k+v+rs++dp+++eitY+g+H+++ GSVIVT01028718001 133 LDDGFSWRKYGQKDILGAKYPRSYYKCTHRnaqGCLATKQVQRSDDDPTIFEITYRGRHTCT 194 59***************************98899**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.353 | 128 | 191 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.9E-29 | 130 | 195 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-26 | 131 | 195 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-43 | 133 | 195 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-27 | 134 | 193 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MENMGSWEQK NLINELTNGR ELAKQLQIHL SVSSSSHDAR ESLVQKILTS YEKALSLLRC 60 SGPVGEPQAA AAGGGGAIGI GMSESPRSLS GSPRSEDSDK EQEHKDGSRK RKTLPRWTKQ 120 VQMSLGPGPE GPLDDGFSWR KYGQKDILGA KYPRSYYKCT HRNAQGCLAT KQVQRSDDDP 180 TIFEITYRGR HTCTQVSQQI PPPAALPGNQ GLMDSKDHQQ FNLQPQQNQQ QAQDMLLSFQ 240 SGLRVVTEGL DTPSDQAFPP FCFTSTSNIK VEEPGFSPSM MDNNIVGNFP TSFVSPAASR 300 SNYFSMSSDE MNSLGGNQNL QAPEANLNEI ISAAASTTNP QFEQFPFGSM EFDPNFNFDH 360 LGFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 5e-21 | 133 | 193 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 112 | SRKRKT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.8481 | 0.0 | pedicel |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT036463 | 0.0 | KT036463.1 Vitis vinifera cultivar Vidal Blanc WRKY30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002267793.2 | 0.0 | PREDICTED: probable WRKY transcription factor 53 | ||||
TrEMBL | E0CUJ8 | 0.0 | E0CUJ8_VITVI; Uncharacterized protein | ||||
STRING | VIT_16s0050g02510.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 3e-54 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01028718001 |
Entrez Gene | 100256922 |