PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028516001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 480aa    MW: 52620.2 Da    PI: 5.6748
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028516001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.7e-16274320455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  GSVIVT01028516001 274 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 320
                        6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.146270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-16273324No hitNo description
SuperFamilySSF474595.5E-21273349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-21274331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13274320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-18276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MNHCVPDFEV DDEDAIPLTR PKKSAAMVED DEIMELLWQN GQVVMQIQNQ RSFKKSQPSK  60
FPIQDAVLPP EQSKIRSSAP VDESSAQLFM QEDEMASWLH YPLDDFCADL LDPTPCVNAS  120
PPPARPNLSP DVRQPEERPA ATKPPIPPAR RVELDSKVHN FLHFPRKSTA ESGEPSSSRP  180
AGMESTVAAT SAAGEHTTFE LTMTSSPEGS GSGGSASAGA EPTPKAPADD RKRKGREGDD  240
TAEYQSEDVE FESADAKKQV RGSATAKRSR AAEVHNLSER RRRDRINEKM KALQELIPRC  300
NKSDKASMLD EAIEYLKSLQ LQVQMMSMGC SMVPMMYPGV QQYMPQMGMG MGMGMGMEMG  360
MNRPMMPFPS VLGGSTLPTT AAAAHLGQRY PMPAFHMPHM AAPDSSRIQA NNQSDPVLNS  420
LGTQSSNQPR VPNFADPYLQ YLQQMQMPPA QNQAMGQQNT SKPSTSKGTE NLENHRSGR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278283ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4550600.0AM455060.2 Vitis vinifera contig VV78X086970.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652457.10.0PREDICTED: transcription factor PIF1 isoform X2
TrEMBLA0A438H5H60.0A0A438H5H6_VITVI; Transcription factor PIF1
STRINGVIT_07s0005g05100.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.36e-58phytochrome interacting factor 3-like 5