PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028354001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 282aa    MW: 31942 Da    PI: 6.5797
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028354001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.51.6e-50101381129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrF P+deelv++yL kk++++++    ++ e+d++ +ePw+Lp  +k +++ewyfFs rd+kyatg r+nrat+sgyWkatgkd++v
  GSVIVT01028354001  10 LPPGFRFYPSDEELVCHYLYKKITNEDVLK-GTLVEIDLHICEPWQLPDVAKLNSTEWYFFSFRDRKYATGYRTNRATTSGYWKATGKDRPV 100
                        79************************9655.78***************87778899************************************ PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                        l+  ++e+vg++ktLvfy++rap+g kt W+mhe+rle
  GSVIVT01028354001 101 LNPtTHEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138
                        **977888***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-618156IPR003441NAC domain
PROSITE profilePS5100557.67610156IPR003441NAC domain
PfamPF023657.6E-2811137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KITNEDVLKG TLVEIDLHIC EPWQLPDVAK  60
LNSTEWYFFS FRDRKYATGY RTNRATTSGY WKATGKDRPV LNPTTHEVVG MRKTLVFYRN  120
RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKTKSE SSSKLSPQYV FDTTASASSP  180
PTHDQTLPCG YQQIPSFSPT HPHQNHDQTT LLNLAVLNPN LVHFASQEMN PCAAANEINS  240
KGSGADEYGF LWDMSCSLGD GVPSSNLEDM RFEENNSIVF L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-48915916168NO APICAL MERISTEM PROTEIN
1ut4_B7e-48915916168NO APICAL MERISTEM PROTEIN
1ut7_A7e-48915916168NO APICAL MERISTEM PROTEIN
1ut7_B7e-48915916168NO APICAL MERISTEM PROTEIN
3swm_A8e-48915919171NAC domain-containing protein 19
3swm_B8e-48915919171NAC domain-containing protein 19
3swm_C8e-48915919171NAC domain-containing protein 19
3swm_D8e-48915919171NAC domain-containing protein 19
3swp_A8e-48915919171NAC domain-containing protein 19
3swp_B8e-48915919171NAC domain-containing protein 19
3swp_C8e-48915919171NAC domain-containing protein 19
3swp_D8e-48915919171NAC domain-containing protein 19
4dul_A7e-48915916168NAC domain-containing protein 19
4dul_B7e-48915916168NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4430960.0AM443096.2 Vitis vinifera contig VV78X095272.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652384.10.0PREDICTED: NAC domain-containing protein 21/22
SwissprotQ84TE62e-68NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A438KE300.0A0A438KE30_VITVI; NAC domain-containing protein 21/22
STRINGVIT_07s0005g03610.t011e-167(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-92NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]