PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01028354001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | NAC | ||||||||
Protein Properties | Length: 282aa MW: 31942 Da PI: 6.5797 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.5 | 1.6e-50 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF P+deelv++yL kk++++++ ++ e+d++ +ePw+Lp +k +++ewyfFs rd+kyatg r+nrat+sgyWkatgkd++v GSVIVT01028354001 10 LPPGFRFYPSDEELVCHYLYKKITNEDVLK-GTLVEIDLHICEPWQLPDVAKLNSTEWYFFSFRDRKYATGYRTNRATTSGYWKATGKDRPV 100 79************************9655.78***************87778899************************************ PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 l+ ++e+vg++ktLvfy++rap+g kt W+mhe+rle GSVIVT01028354001 101 LNPtTHEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138 **977888***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-61 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.676 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-28 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KITNEDVLKG TLVEIDLHIC EPWQLPDVAK 60 LNSTEWYFFS FRDRKYATGY RTNRATTSGY WKATGKDRPV LNPTTHEVVG MRKTLVFYRN 120 RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKTKSE SSSKLSPQYV FDTTASASSP 180 PTHDQTLPCG YQQIPSFSPT HPHQNHDQTT LLNLAVLNPN LVHFASQEMN PCAAANEINS 240 KGSGADEYGF LWDMSCSLGD GVPSSNLEDM RFEENNSIVF L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-48 | 9 | 159 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-48 | 9 | 159 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-48 | 9 | 159 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-48 | 9 | 159 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-48 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
3swm_B | 8e-48 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
3swm_C | 8e-48 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
3swm_D | 8e-48 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
3swp_A | 8e-48 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
3swp_B | 8e-48 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
3swp_C | 8e-48 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
3swp_D | 8e-48 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
4dul_A | 7e-48 | 9 | 159 | 16 | 168 | NAC domain-containing protein 19 |
4dul_B | 7e-48 | 9 | 159 | 16 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM443096 | 0.0 | AM443096.2 Vitis vinifera contig VV78X095272.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010652384.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 2e-68 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A438KE30 | 0.0 | A0A438KE30_VITVI; NAC domain-containing protein 21/22 | ||||
STRING | VIT_07s0005g03610.t01 | 1e-167 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-92 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01028354001 |