PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028314001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 130aa    MW: 14791.2 Da    PI: 6.5466
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028314001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-201869256
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       +y+G+r+++ +g+++AeIrdps ng  +r +lg+f+taeeAa+a+++a+ +++g+
  GSVIVT01028314001 18 RYRGIRRRP-WGKFAAEIRDPSRNG--ARLWLGTFDTAEEAARAYDRAAYAFRGH 69
                       69*******.**********98887..*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.45E-181877No hitNo description
SuperFamilySSF541719.15E-241877IPR016177DNA-binding domain
PfamPF008472.5E-141869IPR001471AP2/ERF domain
SMARTSM003807.2E-361882IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-311877IPR001471AP2/ERF domain
PROSITE profilePS5103225.0531876IPR001471AP2/ERF domain
PRINTSPR003671.0E-111930IPR001471AP2/ERF domain
PRINTSPR003671.0E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MEGGGRRREG EDKAREVRYR GIRRRPWGKF AAEIRDPSRN GARLWLGTFD TAEEAARAYD  60
RAAYAFRGHL AILNFPNEHQ YQNPGYGQTF SSSSSSSYSL EGQVIEFEYL DNNLLEELLE  120
PQGDRRGNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-311811414114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4497491e-166AM449749.2 Vitis vinifera contig VV78X255964.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264390.25e-55PREDICTED: ethylene-responsive transcription factor ERF098
SwissprotQ9LTC59e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A438CMZ81e-60A0A438CMZ8_VITVI; Ethylene-responsive transcription factor ERF098
STRINGVIT_07s0005g03220.t012e-54(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.17e-27ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]