PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028313001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 239aa    MW: 27474.8 Da    PI: 4.8115
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028313001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77e-1996147256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                        +y+GVr+++ +g+++AeIrd +    + +r +lg+f taeeAa+a+++a+ +++g+
  GSVIVT01028313001  96 RYRGVRRRP-WGKFAAEIRDSTR---QgARLWLGTFTTAEEAARAYDKAAYAMRGH 147
                        59*******.**********322...24**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.0E-1496147IPR001471AP2/ERF domain
CDDcd000182.31E-2996155No hitNo description
PROSITE profilePS5103223.69696154IPR001471AP2/ERF domain
SMARTSM003802.5E-3496160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-3196155IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2296155IPR016177DNA-binding domain
PRINTSPR003675.8E-1197108IPR001471AP2/ERF domain
PRINTSPR003675.8E-11120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGQHCKRTEK LCIQASGTEF YLAFLTSYRH EYDSVSLCWS VSTDNSSQII VDLWRFNCPY  60
YVVVAVLVAA ISLGVIEVSM EEHPKGKCKE EKGEIRYRGV RRRPWGKFAA EIRDSTRQGA  120
RLWLGTFTTA EEAARAYDKA AYAMRGHLAI LNFPEEHQQV ASPANTERTS DVHEKLVFEF  180
EYLDDKLLED LLETSENPDN DTVTNQNQVF EFEYLDDKVL EDLLECEEKE TTQKRAKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-329619914126Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4612221e-157AM461222.2 Vitis vinifera contig VV78X232895.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264347.13e-67PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC56e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A438KE028e-66A0A438KE02_VITVI; Ethylene-responsive transcription factor ERF098
TrEMBLF6HZI88e-66F6HZI8_VITVI; Uncharacterized protein
STRINGVIT_07s0005g03210.t011e-66(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-32ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]