PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028312001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 156aa    MW: 18227.3 Da    PI: 4.5151
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028312001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-191768256
                AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                       +y+GVr+++ +g+++AeIrdp     + +r +lg+f taeeAa+a+++a+ +++g+
  GSVIVT01028312001 17 RYRGVRRRP-WGKFAAEIRDP---ArQGARMWLGTFTTAEEAARAYDRAAYEMRGP 68
                       6********.**********8...3334**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.7E-141767IPR001471AP2/ERF domain
CDDcd000187.87E-201776No hitNo description
PROSITE profilePS5103224.8691775IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-231776IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.9E-321777IPR001471AP2/ERF domain
SMARTSM003803.2E-361781IPR001471AP2/ERF domain
PRINTSPR003673.8E-111829IPR001471AP2/ERF domain
PRINTSPR003673.8E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MEPDSKEKSN EEKGEVRYRG VRRRPWGKFA AEIRDPARQG ARMWLGTFTT AEEAARAYDR  60
AAYEMRGPLA ILNFPEEYEN VACPSHSSSV RDVHEKQVFE FEYLDDKLLE DLLECEEKKT  120
KNEDAHEKQV FEFECLDDKL LEDLLECEEK KTKNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-331712314129Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4612221e-139AM461222.2 Vitis vinifera contig VV78X232895.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264229.11e-59PREDICTED: ethylene-responsive transcription factor ERF098
SwissprotQ9LTC55e-42ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLF6HZI63e-58F6HZI6_VITVI; Uncharacterized protein
STRINGVIT_07s0005g03190.t015e-59(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-24ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]