PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028244001
Common NameLOC100264000, VIT_07s0005g02570
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 480aa    MW: 51971.3 Da    PI: 7.8227
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028244001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986.1e-31235293259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  GSVIVT01028244001 235 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDKTILITTYEGNHNHP 293
                        7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-33219295IPR003657WRKY domain
SuperFamilySSF1182906.67E-28227295IPR003657WRKY domain
PROSITE profilePS5081130.24229295IPR003657WRKY domain
SMARTSM007745.2E-37234294IPR003657WRKY domain
PfamPF031065.5E-27236293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MDKPRPEFAF LRSDDFLRPN SSVHETVSTD QKQPIKEMDF FSRNNQHNQP NEQESNRGSS  60
TRTEAAAGVN TGLDLLSLNT GIQRSGNDNL NIRPKTEFDT LQVELERVRD ENRKLRSMLE  120
QITKSYGDLQ GQLLMAMGEA ARLKKDDTTC KPGTRQLMDP RPSGGLDINE ASVSDEKNQE  180
GSVSPANTTE VMSNESEHHK IPILDPSKSE EQASEVPFRK ARVSVRARSE APLISDGCQW  240
RKYGQKMAKG NPCPRAYYRC TMAAGCPVRK QVQRCAEDKT ILITTYEGNH NHPLPPAATA  300
MANSTSAAAA MLLSGSNTSK EALVNSAGFF HPMPYLSTMA SLSASAPFPT ITLDLTQGTN  360
PMHFHRGPPS STSFPSPLHA CPQLIGQPLY APPKIPVLPS AQMGHRHPSM VETVTAAITS  420
DPNFTAALAA AISTIIGAPR SSYGNTPNSH GENSKPFSGM PALPGSPQLP QSCTTFSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21221297176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.124760.0cell culture| fruit| inflorescence| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4561250.0AM456125.1 Vitis vinifera contig VV78X148510.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281194.10.0PREDICTED: probable WRKY transcription factor 47 isoform X1
TrEMBLF6HZF70.0F6HZF7_VITVI; Uncharacterized protein
STRINGVIT_07s0005g02570.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.13e-88WRKY family protein