PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSVIVT01028208001 | ||||||||
Common Name | LOC100258912, VIT_07s0005g02260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 861aa MW: 96045.7 Da PI: 6.4473 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.4 | 2.7e-40 | 130 | 207 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls+ak+yhrrhkvCe+hska +lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ GSVIVT01028208001 130 VCQVEDCGADLSKAKDYHRRHKVCEMHSKAGCALVGNDMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 207 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.4E-32 | 125 | 192 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.71 | 128 | 205 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.4E-37 | 129 | 210 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.3E-29 | 131 | 204 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 1.82E-8 | 282 | 331 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 4.5E-7 | 285 | 312 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.82E-8 | 665 | 780 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 4.5E-7 | 682 | 778 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.18E-8 | 682 | 779 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 861 aa Download sequence Send to blast |
MEAKIGGEAH HFYGIGTSDL RVVGKRSSEW DSNEWKWDGD LFIASPMNPV PSDYTSQQFF 60 PHGSAIPKRK RELEKRRRVI VVQDDNDETG TLSLKLGGHG HSVSEREVGN WEGTSGKKTK 120 LAGVSSSRAV CQVEDCGADL SKAKDYHRRH KVCEMHSKAG CALVGNDMQR FCQQCSRFHV 180 LQEFDEGKRS CRRRLAGHNK RRRKTHPDAA GNGNSLNDDQ ASGYLLISLL RILSNMHSND 240 KSDQTKDQDL LSHLLRSLAS YGGTNGSRNI SGLLQESQLL NDGISVGNTE VVSALLPNGV 300 HADEARVGNM QMTSWQIKLN NFDLNDIYID SDDGMEDLER SPVPENLGTG SLECPSWVQQ 360 DSHQSSPPQT SGNSDSASAQ SPSSSSGEAQ SRTDRIVFKL FGKEPNDFPL VLRAQILDWL 420 SHSPTDIESY IRPGCIVLTI YLRLPESTWE ELCCDLGSSL SRLLDVSNDT FWRTGWVYIR 480 VQHQIAFIYN GQVVVDMSLP LKTNNYSKIL SIKPIAISMS EEAQFLVKGF NLSRPATRLL 540 CALEGKYLVK EATHELMDDI DSVKEHDELQ YLNFSCSIPK MTGRGFIEVE DHGLSSSFFP 600 IIVAEKDVCS EICMLESTIE MTDIDEDGYL FSFKRFKWLM EFSMDRDWCA VVKKLLDIML 660 DGTVGAGEYP SLKLAFMEMG LLHRAVRRNS RPLVELLLRY VPERGGRASF LLRPDVVGPA 720 GLTPLHIAAG RDGSEDVLDA LTDDPGMVGV EAWKSARDST GFTPEDYARL RGHYSYIHLV 780 QKKINRRLGN GHVVVDQCKR CNHKVAYGNA SRSLLYRPAM LSMVAIAAVC VCVALLFKSS 840 PEVLYVFTPF RWELLDYGTS * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-29 | 125 | 204 | 5 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 74 | 78 | KRRRV |
2 | 199 | 205 | KRRRKTH |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Vvi.5619 | 0.0 | bud| flower| fruit| inflorescence| stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00633 | PBM | Transfer from PK06791.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FQ380788 | 0.0 | FQ380788.1 Vitis vinifera clone SS0ACG30YE04. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010652308.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 1 | ||||
Swissprot | Q9SMX9 | 0.0 | SPL1_ARATH; Squamosa promoter-binding-like protein 1 | ||||
TrEMBL | F6HZE3 | 0.0 | F6HZE3_VITVI; Uncharacterized protein | ||||
STRING | VIT_07s0005g02260.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2595 | 14 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GSVIVT01028208001 |
Entrez Gene | 100258912 |
Publications ? help Back to Top | |||
---|---|---|---|
|