PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028171001
Common NameVIT_07s0005g01950
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 273aa    MW: 30942.4 Da    PI: 6.2521
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028171001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.1e-18754148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  GSVIVT01028171001  7 KGPWTAEEDTLLNNYITIHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 54
                       79********************************************97 PP
2Myb_DNA-binding51.52.3e-1660103146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ T +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  GSVIVT01028171001  60 RGNITLQEQLLILELHSRYGNR-WSKIAQHLP-GRTDNEIKNYWRT 103
                        7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.464254IPR017930Myb domain
SuperFamilySSF466897.11E-314101IPR009057Homeodomain-like
SMARTSM007175.9E-14656IPR001005SANT/Myb domain
PfamPF002493.1E-15754IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-23861IPR009057Homeodomain-like
CDDcd001671.50E-11954No hitNo description
PROSITE profilePS5129424.2755109IPR017930Myb domain
SMARTSM007172.5E-1559107IPR001005SANT/Myb domain
PfamPF002494.4E-1560103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2362108IPR009057Homeodomain-like
CDDcd001672.02E-875103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MNMDLRKGPW TAEEDTLLNN YITIHGEGRW NSLARCAGLK RTGKSCRLRW LNYLRPNVKR  60
GNITLQEQLL ILELHSRYGN RWSKIAQHLP GRTDNEIKNY WRTRVQKQAK QLKCDVNSKQ  120
FRDTMRYVWM PRLVERIKAA GGDSTPTAPA TYGHHMSSQI LDMPRNGEFG LGYSDPGLRP  180
EFSGGPSEGS ETQVSPVSDM TDYYDFSGGH CSDSQQNGVI SYPEQADTSS GCLEFEGLEQ  240
SNGWSLGGGD SLENLLNDED IWFLKQQFFD DF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-25110921128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6003230.0FJ600323.1 Vitis vinifera R2R3 transcription factor MYB108-like protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267917.11e-177R2R3 transcription factor MYB108-like protein 2
SwissprotQ10MB43e-85MYB2_ORYSJ; Transcription factor MYB2
TrEMBLD7U2M60.0D7U2M6_VITVI; Uncharacterized protein
STRINGVIT_07s0005g01950.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.16e-84myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]