PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01028147001 | ||||||||
Common Name | LOC100264006, VIT_07s0005g01710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | WRKY | ||||||||
Protein Properties | Length: 303aa MW: 33761.7 Da PI: 7.2534 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.8 | 1.1e-33 | 149 | 206 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C+vkk+ver+ +dp +v++tYeg+H+h+ GSVIVT01028147001 149 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERCFKDPAIVVTTYEGQHTHP 206 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038130 | 1.1E-102 | 1 | 301 | IPR017396 | PWRKY transcription factor, group IIc |
Gene3D | G3DSA:2.20.25.80 | 3.2E-35 | 133 | 208 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-29 | 140 | 208 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.422 | 143 | 208 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-39 | 148 | 207 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-26 | 149 | 206 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MERSGVMKME DPVGSWSFSD HAPDIPAVFD FSDEGEKGTL GFMELLSIQN YGPPLFDLVQ 60 LPSLEKPTGA APAVPASSDV VNPPATPNSS SVSSASSHEQ GSKAVEEEEE DEEEKKTKKE 120 LKPKKTTSQK RQREPRFAFM TKSEVDHLED GYRWRKYGQK AVKNSPFPRS YYRCTSASCN 180 VKKRVERCFK DPAIVVTTYE GQHTHPSPIM PRANPSSIAT TFAGPRLQTT PFQHLHLHHH 240 QQQQHPSFND VPLLNYGHGS SFGSAARSVQ ERRSCAPTSA LHRDHGLLQD IVPSHMRKEE 300 EI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-27 | 138 | 208 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-27 | 138 | 208 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.9012 | 0.0 | bud| cell culture| fruit| inflorescence |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM442542 | 0.0 | AM442542.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X041500.13, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002277882.1 | 0.0 | PREDICTED: probable WRKY transcription factor 23 | ||||
Swissprot | O22900 | 7e-61 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | D7U2K4 | 0.0 | D7U2K4_VITVI; WRKY transcription factor | ||||
STRING | VIT_07s0005g01710.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47260.1 | 3e-52 | WRKY DNA-binding protein 23 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01028147001 |
Entrez Gene | 100264006 |
Publications ? help Back to Top | |||
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