PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028147001
Common NameLOC100264006, VIT_07s0005g01710
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 303aa    MW: 33761.7 Da    PI: 7.2534
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028147001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.81.1e-33149206259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C+vkk+ver+ +dp +v++tYeg+H+h+
  GSVIVT01028147001 149 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERCFKDPAIVVTTYEGQHTHP 206
                        8********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381301.1E-1021301IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.803.2E-35133208IPR003657WRKY domain
SuperFamilySSF1182902.35E-29140208IPR003657WRKY domain
PROSITE profilePS5081131.422143208IPR003657WRKY domain
SMARTSM007741.1E-39148207IPR003657WRKY domain
PfamPF031062.8E-26149206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MERSGVMKME DPVGSWSFSD HAPDIPAVFD FSDEGEKGTL GFMELLSIQN YGPPLFDLVQ  60
LPSLEKPTGA APAVPASSDV VNPPATPNSS SVSSASSHEQ GSKAVEEEEE DEEEKKTKKE  120
LKPKKTTSQK RQREPRFAFM TKSEVDHLED GYRWRKYGQK AVKNSPFPRS YYRCTSASCN  180
VKKRVERCFK DPAIVVTTYE GQHTHPSPIM PRANPSSIAT TFAGPRLQTT PFQHLHLHHH  240
QQQQHPSFND VPLLNYGHGS SFGSAARSVQ ERRSCAPTSA LHRDHGLLQD IVPSHMRKEE  300
EI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-27138208777Probable WRKY transcription factor 4
2lex_A5e-27138208777Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.90120.0bud| cell culture| fruit| inflorescence
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4425420.0AM442542.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X041500.13, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277882.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotO229007e-61WRK23_ARATH; WRKY transcription factor 23
TrEMBLD7U2K40.0D7U2K4_VITVI; WRKY transcription factor
STRINGVIT_07s0005g01710.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.13e-52WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. PrĂ¡t T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]