PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01028129001 | ||||||||
Common Name | LOC100262306, VIT_07s0005g01520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | WRKY | ||||||||
Protein Properties | Length: 243aa MW: 27548.6 Da PI: 6.2395 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96 | 2.6e-30 | 47 | 105 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d ++++itY+++Hnh+ GSVIVT01028129001 47 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCRTDASMLIITYTSSHNHP 105 699***********************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.9E-32 | 37 | 107 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.97E-26 | 43 | 107 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.2E-36 | 46 | 106 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.1 | 47 | 107 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-25 | 48 | 105 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MDGSVKVSKE LKHETQASKK RRVVQKTVVT VRIEANVGKQ KNEGPPSDFW SWRKYGQKPI 60 KGSPYPRGYY RCSTSKGCSA KKQVERCRTD ASMLIITYTS SHNHPGPDLS TTPNSLNQPK 120 DPQTQPIEET PTTPKEDHQP QQPITMASDE DASEDHFHYF QSTISHEEDP FKVNLEKTHD 180 SLGVVFDEQP LAYPHLMTFS TPKSEENDFF DELEELPTSS SFTSFMRSGF NFFDDRILVL 240 PS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 8e-22 | 47 | 107 | 17 | 79 | Disease resistance protein RRS1 |
5w3x_D | 8e-22 | 47 | 107 | 17 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.19289 | 0.0 | inflorescence |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM459847 | 0.0 | AM459847.2 Vitis vinifera contig VV78X063071.16, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002270750.3 | 0.0 | PREDICTED: probable WRKY transcription factor 65 | ||||
TrEMBL | D7U2J0 | 1e-180 | D7U2J0_VITVI; Uncharacterized protein | ||||
STRING | VIT_07s0005g01520.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 1e-34 | WRKY DNA-binding protein 35 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01028129001 |
Entrez Gene | 100262306 |