PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028069001
Common NameVIT_07s0005g01010
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ARR-B
Protein Properties Length: 544aa    MW: 60874.4 Da    PI: 6.4623
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028069001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.53.5e-24191240151
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                        kpr++Wtp LH++Fv av+qL G  kA+Pk+ile m+++gLt+e+v+SHLQ
  GSVIVT01028069001 191 KPRMVWTPALHQQFVAAVNQL-GYSKAVPKKILEQMNLPGLTRENVASHLQ 240
                        79*******************.9**************************** PP
2Response_reg68.43.2e-23261321107
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl vdD+++ ++++ ++le+  y +v+ ++++eeal ll+e    +D++l D+ mp+++Gl+ll+ i  e  ++p++++++ ++ e++ + +
  GSVIVT01028069001  26 VLAVDDDQTCLQIMGRMLERCMY-KVTKCRNAEEALSLLREDSsrFDIVLSDLHMPDISGLKLLEIIGLEM-DMPVVMMSSDEKRETIMKGI 115
                        799********************.***************888888********************996644.8******************* PP

                        HTTESEEEESS--HHHH CS
       Response_reg  91 kaGakdflsKpfdpeel 107
                          Ga d+ +Kp+ ++++
  GSVIVT01028069001 116 IHGACDYWVKPVRMDAI 132
                        ***********998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.98E-3122144IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.6E-3623152No hitNo description
SMARTSM004482.6E-2324136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011036.8525140IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.0E-2026132IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.29E-2327140No hitNo description
SuperFamilySSF466891.27E-15188242IPR009057Homeodomain-like
PROSITE profilePS512949.247188250IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-23190240IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-21191242IPR006447Myb domain, plants
PfamPF002491.3E-6193240IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MNVETGEGSM SVTAAVPLQF PEGIRVLAVD DDQTCLQIMG RMLERCMYKV TKCRNAEEAL  60
SLLREDSSRF DIVLSDLHMP DISGLKLLEI IGLEMDMPVV MMSSDEKRET IMKGIIHGAC  120
DYWVKPVRMD AIQLVWQHVI RKRRNGLKEM EHAMEDDVEG GNEEGSRSMK RKKDREDEGE  180
SRNAMPTTVK KPRMVWTPAL HQQFVAAVNQ LGYSKAVPKK ILEQMNLPGL TRENVASHLQ  240
VMEKIFSRKI YCYCLVKDTD NYSYMVQKFR LYLSRVSEIS QGPEKTYMNP ASLNGCNPQL  300
NVVGEVPLQG LTREGTSRTP MAFVDQRNLF HYGVGQQACN SSKQAKLLHE VPANMLQQPA  360
QMYRSLDFQV SEGTPRSLNL PAANDDSVYG SQSSFSTMQM AQTPYGMPML NEISGHQHFG  420
HHPLSNQILS NDIEAQALRT VGNPIESNAA ACYPLASPMV DFSKDHSHGF HLEMNAIYGN  480
ASSVGQGMVS LGEEYGYRNP ENIAQPGNNL LVDDSFRMKP ESMPRPGCKS LSFGQHFDHG  540
FMS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16187240154ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4416470.0AM441647.2 Vitis vinifera contig VV78X138218.16, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLF6HZ770.0F6HZ77_VITVI; Uncharacterized protein
STRINGVIT_07s0005g01010.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.18e-92response regulator 2