PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01028050001 | ||||||||
Common Name | VIT_07s0005g00820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ERF | ||||||||
Protein Properties | Length: 260aa MW: 29171.7 Da PI: 7.9203 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.4e-19 | 75 | 123 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdps+ r++lg+f taeeAa+a+++ ++k++g GSVIVT01028050001 75 YRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFNTAEEAARAYDREARKIRG 123 9*******.**********965...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.604 | 74 | 131 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-32 | 74 | 132 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-22 | 74 | 132 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.1E-39 | 74 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-12 | 75 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.07E-32 | 75 | 132 | No hit | No description |
Pfam | PF00847 | 5.6E-12 | 75 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-12 | 97 | 113 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MCGGAIISDF IPRNRNRRDP APDLWPDSFF AKPDGCEYDL GRFSQKGLPN LKRSQPILDD 60 EPEVKPAKRV RKNLYRGIRQ RPWGKWAAEI RDPSKGVRVW LGTFNTAEEA ARAYDREARK 120 IRGKKAKVNF PNEDDDYTEN HQNHRALPTR WNSNPSISFP SNGFNTKACV GKVKNQKENQ 180 TETVTEAEKE EMEVQKLSEE LMAYESVMKF YQIPYLDGNS AAVPNAAQEN AGACGGAAME 240 ALWSFDEFAV APQPTSAAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-22 | 75 | 131 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 7e-22 | 75 | 131 | 6 | 63 | ATERF1 |
3gcc_A | 7e-22 | 75 | 131 | 6 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.843 | 0.0 | bud| cell culture| fruit| pedicel| root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ379377 | 0.0 | FQ379377.1 Vitis vinifera clone SS0AEB10YJ24. | |||
GenBank | FQ381589 | 0.0 | FQ381589.1 Vitis vinifera clone SS0ABP1YD10. | |||
GenBank | FQ383448 | 0.0 | FQ383448.1 Vitis vinifera clone SS0ABG1YN24. | |||
GenBank | FQ386656 | 0.0 | FQ386656.1 Vitis vinifera clone SS0AEB29YD04. | |||
GenBank | FQ391465 | 0.0 | FQ391465.1 Vitis vinifera clone SS0AP1YL16. | |||
GenBank | FQ392365 | 0.0 | FQ392365.1 Vitis vinifera clone SS0AFA5YP07. | |||
GenBank | FQ392434 | 0.0 | FQ392434.1 Vitis vinifera clone SS0AFA5YK23. | |||
GenBank | FQ393984 | 0.0 | FQ393984.1 Vitis vinifera clone SS0AFA23YD11. | |||
GenBank | FQ395089 | 0.0 | FQ395089.1 Vitis vinifera clone SS0AFA17YM22. | |||
GenBank | FQ396500 | 0.0 | FQ396500.1 Vitis vinifera clone SS0AEB9YL15. | |||
GenBank | FQ397035 | 0.0 | FQ397035.1 Vitis vinifera clone SS0AEB8YB03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002272464.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | D7U2C6 | 0.0 | D7U2C6_VITVI; Uncharacterized protein | ||||
STRING | VIT_07s0005g00820.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 1e-39 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01028050001 |