PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01027949001 | ||||||||
Common Name | VIT_05s0049g02260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 29792.6 Da PI: 9.3395 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.7 | 6.5e-19 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++vk++G g+W+++ar g++R +k+c++rw +yl GSVIVT01027949001 17 KGPWTAEEDRLLTEYVKLHGEGRWNSVARLAGLRRNGKSCRLRWVNYL 64 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ GSVIVT01027949001 70 RGQITPHEENIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.104 | 12 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.02E-30 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-16 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-17 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-24 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.29E-11 | 19 | 64 | No hit | No description |
SMART | SM00717 | 7.5E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.755 | 69 | 119 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.1E-14 | 70 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-24 | 72 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.80E-10 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MMAGHLGWGI IEEGWRKGPW TAEEDRLLTE YVKLHGEGRW NSVARLAGLR RNGKSCRLRW 60 VNYLRPDLKR GQITPHEENI ILELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKGK 120 LPSDKSEKAK TRLLRKQQFY QQQQQQQQQQ QQQQQQQLNQ LDLKRIMALL DQPDIGDTPM 180 AQARQDLGSC IYSTHHAAEE HGYVHLPIPN ADVSTQESSS EDMLWDGLWN LDDFHGNLSA 240 ACAASKASLH HLVAPFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-26 | 17 | 118 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM474331 | 0.0 | AM474331.1 Vitis vinifera contig VV79X001023.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002282421.1 | 0.0 | PREDICTED: protein ODORANT1 | ||||
TrEMBL | A0A438I056 | 0.0 | A0A438I056_VITVI; Transcription factor MYB2 | ||||
STRING | VIT_05s0049g02260.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 7e-85 | myb domain protein 305 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01027949001 |