PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01027770001

Common Name

VIT_05s0049g00490, VITISV_032915

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

ERF

Protein Properties

Length: 131aa MW: 14613.2 Da PI: 5.3399

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01027770001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.3	4.6e-19	20	70	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd + + +r++lg+f +aeeAa+a+++a+ +++g GSVIVT01027770001 20 RYRGVRRRP-WGKFAAEIRDSTR---HgARVWLGTFNSAEEAARAYDRAAYAMRG 70 6******.******422...25***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.37E-18	20	79	No hit	No description
SMART	SM00380	1.1E-33	20	84	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.565	20	78	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-30	20	80	IPR001471	AP2/ERF domain
Pfam	PF00847	8.8E-15	20	70	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.32E-23	20	79	IPR016177	DNA-binding domain
PRINTS	PR00367	3.3E-11	21	32	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.3E-11	44	60	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025242	anatomy	infructescence axis
PO:0007017	developmental stage	sporophyte senescent stage
PO:0007089	developmental stage	stem elongation stage

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MDEDPEAKMK EQKEGGGEVR YRGVRRRPWG KFAAEIRDST RHGARVWLGT FNSAEEAARA 60 YDRAAYAMRG SLAILNFPNE YHTPGTASSS ASSSMPEGDQ QGKQVIELEY LDDKLLEDLL 120 DSEDKKNKKT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-35	20	128	14	127	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM436879	0.0	AM436879.2 Vitis vinifera contig VV78X163339.2, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002284760.3	2e-92	PREDICTED: ethylene-responsive transcription factor ERF095
Swissprot	Q9LTC5	9e-42	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A5AVA3	4e-91	A5AVA3_VITVI; Uncharacterized protein
STRING	VIT_05s0049g00490.t01	7e-92	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23220.1	3e-19	ERF family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01027770001

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]