PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027680001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 574aa    MW: 63132.3 Da    PI: 6.1327
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027680001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS333.63.6e-1022195727374
               GRAS   7 ecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                         +Ae v++g++ laq +Larl+++ sp g+p+qR+a+yf+eAL+  l+++++++    ++ ++s+ + + ++ a+k fse+sP+++f+++t+
  GSVIVT01027680001 219 PAAELVETGNTILAQGILARLNHQLSPIGKPFQRAAFYFKEALQLLLHSNSNNTNPLATSPHSSPFSLIFKIGAYKSFSEISPLIQFANFTC 310
                        589*********************************************9777777666666666777************************* PP

               GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                         qaIlea+eg +r+HiiDfdi++G+QW++L+q+La R++g+psl+iT+++s +++++ el   +e+L++fA e+++ fe ++l   +l++l+
  GSVIVT01027680001 311 IQAILEALEGFDRIHIIDFDIGYGGQWASLMQELALRNGGAPSLKITAFASLSNHDQLELGLARENLNHFAGEINMAFELEIL---SLDSLN 399
                        **********************************************************************************9...889999 PP

               GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                           L+++++Ea+aVnl +  ++ +  +++l+     vL++vk+lsPk++v  ++ +d+++ ++ +++l+a++ y al++sl+a    +s++ 
  GSVIVT01027680001 400 SLPLHLSENEAVAVNLPVGSFSNY--PLPLPL----VLRVVKQLSPKIMVSLDRGCDRTDLPYSHHILHAFQSYLALLESLDAV-NVNSDAL 484
                        99****************887776..666666....*********************************************665.5799*** PP

               GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        +k+Er+ll++ i+++v  ++++     e+   Wr+ l ++GF+p+++s++ ++qa++l+++++++g++ve+++ slvl+W+++ L+s+SaWr
  GSVIVT01027680001 485 QKIERFLLQPGIEKIVLGRHRS----PEKTPPWRALLLSSGFSPLTFSNFSESQAECLVKRTPVRGFHVEKRQSSLVLCWQRKDLISASAWR 572
                        *****************99998....9****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.179187552IPR005202Transcription factor GRAS
PfamPF035141.2E-99219572IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MKGKRAVSEL VCGCWTRLSG FSFFLRKKEV VVWALSLPLS WILEEAQVLL HPPQHCLLLP  60
DTTSSNAGVE LHPIPASVDL GAGEKCGLGM EDWESVLSET AASPSQEQSI LRWIMGDVED  120
PSVGLNKLLQ SGGGGPPDFE FSSGFGVVDQ GFGFEPSLDE KPQILIPQVL INQHQAQHTQ  180
NPAFFLPLPY AQQEQNLLLP PQAKRHNTGP IGSIEQNCPA AELVETGNTI LAQGILARLN  240
HQLSPIGKPF QRAAFYFKEA LQLLLHSNSN NTNPLATSPH SSPFSLIFKI GAYKSFSEIS  300
PLIQFANFTC IQAILEALEG FDRIHIIDFD IGYGGQWASL MQELALRNGG APSLKITAFA  360
SLSNHDQLEL GLARENLNHF AGEINMAFEL EILSLDSLNS LPLHLSENEA VAVNLPVGSF  420
SNYPLPLPLV LRVVKQLSPK IMVSLDRGCD RTDLPYSHHI LHAFQSYLAL LESLDAVNVN  480
SDALQKIERF LLQPGIEKIV LGRHRSPEKT PPWRALLLSS GFSPLTFSNF SESQAECLVK  540
RTPVRGFHVE KRQSSLVLCW QRKDLISASA WRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3122157127378Protein SCARECROW
5b3h_A2e-3122157126377Protein SCARECROW
5b3h_D2e-3122157126377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.88250.0bud| fruit| inflorescence| pedicel| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4600670.0AM460067.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X219796.5, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661679.10.0PREDICTED: scarecrow-like protein 27
SwissprotO813161e-179SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A438FU620.0A0A438FU62_VITVI; Scarecrow-like protein 6
STRINGVIT_15s0048g00270.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-176GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]