PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027493001
Common NameVIT_15s0048g02120
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 582aa    MW: 65098.7 Da    PI: 9.3834
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027493001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding409.1e-133076148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g WT++ d  l+ av+++ g++Wk+Ia+++  g t+ qc +rwqk+l
  GSVIVT01027493001 30 KGFWTEQKDRVLAYAVNKFKGKNWKKIAECVT-GTTDVQCLHRWQKVL 76
                       688****************************9.************986 PP
2Myb_DNA-binding52.61e-1682128148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+WT+eEd+l++++v + G++ W+ +a+++  gR +kqc++rw+++l
  GSVIVT01027493001  82 KGPWTKEEDDLIIELVGKQGNKKWAEVAKCLT-GRIGKQCRERWHNHL 128
                        79*****************************9.*************97 PP
3Myb_DNA-binding56.46.9e-18136176345
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        +WT+eE++ l++a++++G++ W+ Ia+ ++ gRt++++k++w+
  GSVIVT01027493001 136 PWTKEEELVLIQAHQKYGNK-WAEIAKILP-GRTENSIKNHWN 176
                        8*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.7862576IPR017930Myb domain
SuperFamilySSF466891.24E-122883IPR009057Homeodomain-like
SMARTSM007177.3E-92978IPR001005SANT/Myb domain
PfamPF002491.0E-93176IPR001005SANT/Myb domain
CDDcd001677.86E-93376No hitNo description
Gene3DG3DSA:1.10.10.605.8E-203392IPR009057Homeodomain-like
PROSITE profilePS5129427.80177132IPR017930Myb domain
SuperFamilySSF466891.69E-3179175IPR009057Homeodomain-like
SMARTSM007171.6E-1581130IPR001005SANT/Myb domain
CDDcd001672.39E-1384128No hitNo description
PfamPF139212.8E-1785142No hitNo description
Gene3DG3DSA:1.10.10.607.3E-2593135IPR009057Homeodomain-like
SMARTSM007178.9E-18133181IPR001005SANT/Myb domain
PROSITE profilePS5129422.192133183IPR017930Myb domain
CDDcd001671.08E-13136176No hitNo description
Gene3DG3DSA:1.10.10.602.0E-23136183IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MVLEWSEFYD IVWYYCIYRR VTGPARRSTK GFWTEQKDRV LAYAVNKFKG KNWKKIAECV  60
TGTTDVQCLH RWQKVLDPNL VKGPWTKEED DLIIELVGKQ GNKKWAEVAK CLTGRIGKQC  120
RERWHNHLNP AINKAPWTKE EELVLIQAHQ KYGNKWAEIA KILPGRTENS IKNHWNCSLK  180
KRLNLNASAF HLPGFPTNNL DSLKMERETE NGATQVVKQS LGTTFSLDKQ MESQSSVDTH  240
LDLAVGYSSG KESHLPPFKK VNCRFPKREA IGPMKPPFQT IFDKKEVPEC DLASGRCQDS  300
AVNDKPSRDP HIKANKLNES CSISLRDQLT LWHSAKPGEH SPPLPHSGCI PPSSNSPLDE  360
IGCNGKTNVL PHKMDLPVSA KRSLQPPKRM SKLLSTDSSG AIDSGSRGQS KNFFPSTQTH  420
EVNGTNEHTE KCLNLEDKNL GGLCYEPLNL EGLNTFLQSG TFPRSDSYIQ QSSSPVSSYT  480
PASNGKGISG SCSSPESILR SAARSFKNTP SIIRKRNRTP IETDNANNND GTGTEEKTDS  540
KVLPKVKQLF LSPPKSQKLD PSSVVKLVEK RLEYAFDKEQ D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-58301836159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-58301836159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4778540.0AM477854.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X120914.8, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019081314.10.0PREDICTED: transcriptional activator Myb
RefseqXP_019081315.10.0PREDICTED: transcriptional activator Myb
TrEMBLD7U7H50.0D7U7H5_VITVI; Uncharacterized protein
STRINGVIT_15s0048g02120.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.18e-79Homeodomain-like protein