PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027477001
Common NameVIT_15s0048g02270
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 336aa    MW: 37092.7 Da    PI: 7.2815
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027477001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.11.2e-5161351128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lp+GfrFhPtdeelv++yLk k+ g + ++ ++i+evd++k+ePwdLp  + +++++ ew+fF++ d ky+tg+r+nrat++gyWk tgkd+
  GSVIVT01027477001   6 LPVGFRFHPTDEELVDHYLKLKILGMNSHV-DIIPEVDVCKWEPWDLPvlSVIQTNDPEWFFFCPPDYKYPTGRRSNRATEAGYWKPTGKDR 96 
                        79*************************999.99***************6447788888********************************** PP

                NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++s+ ++el g+kktLvfy+grap++++t+Wvmheyr+
  GSVIVT01027477001  97 NIKSRaTKELLGTKKTLVFYRGRAPQSVRTNWVMHEYRA 135
                        ****977888***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-573154IPR003441NAC domain
PROSITE profilePS5100554.7596154IPR003441NAC domain
PfamPF023652.9E-277134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MASESLPVGF RFHPTDEELV DHYLKLKILG MNSHVDIIPE VDVCKWEPWD LPVLSVIQTN  60
DPEWFFFCPP DYKYPTGRRS NRATEAGYWK PTGKDRNIKS RATKELLGTK KTLVFYRGRA  120
PQSVRTNWVM HEYRAAIASL PANKAYVLCR LKRKTDENTG PDIPPETNVN GMLPELSIIQ  180
ATSLMNMEVD NSSTGIVFNM DGLANMVTLG GEPSHHASIS ASNIGNYQVE EPTPEDEHPF  240
GELASQRSSP VDSGNLRYGS IGKLSARPQS PLKGVYGKGG GSSSDTDTEV LQVQYSQSRK  300
TSSLINGVSH SKHCMPSPMA RRSYATSQLS SINQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-43215711171Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.252430.0flower| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269|PubMed:18443413}.
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). Expressed in guard cells (PubMed:18443413). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:18443413}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4834371e-148AM483437.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X127436.12, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268892.10.0PREDICTED: protein NTM1-like 9 isoform X3
SwissprotF4JN359e-74NTL9_ARATH; Protein NTM1-like 9
TrEMBLA0A438DAW10.0A0A438DAW1_VITVI; Protein NTM1-like 9
STRINGVIT_15s0048g02270.t011e-174(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.35e-76NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]