PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01027173001 | ||||||||
Common Name | VIT_15s0046g00230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | LBD | ||||||||
Protein Properties | Length: 155aa MW: 17638.3 Da PI: 6.5088 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 109.2 | 3.1e-34 | 2 | 94 | 8 | 100 |
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 lrr+C +dC+lapyfp+ +++kfa vh++FGasnv+++++ ++e++reda+++++yeA ar+rdPvyG++g i++lq+ ++ lk++l+++++ GSVIVT01027173001 2 LRRRCDRDCILAPYFPSYEAEKFAGVHRVFGASNVIRMIQMVEESRREDAVKAIIYEATARLRDPVYGSAGAIFHLQKMIQDLKTQLDSIRT 93 89*************************************************************************************99887 PP DUF260 100 e 100 + GSVIVT01027173001 94 Q 94 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.799 | 1 | 95 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.9E-34 | 1 | 92 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MLRRRCDRDC ILAPYFPSYE AEKFAGVHRV FGASNVIRMI QMVEESRRED AVKAIIYEAT 60 ARLRDPVYGS AGAIFHLQKM IQDLKTQLDS IRTQTLVLQE QRDQLLGILK NVHHMDPVSP 120 MDFPMFGAAG SLSNGDILRY DPSTFPLDYC DWIL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-30 | 1 | 96 | 17 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-30 | 1 | 96 | 17 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.21273 | 0.0 | flower |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM444013 | 0.0 | AM444013.2 Vitis vinifera contig VV78X034710.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010661963.2 | 1e-108 | PREDICTED: LOB domain-containing protein 1 | ||||
TrEMBL | A0A438IF72 | 1e-107 | A0A438IF72_VITVI; LOB domain-containing protein 1 | ||||
STRING | VIT_15s0046g00230.t01 | 1e-107 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP13259 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-40 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01027173001 |