PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01027069001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | WRKY | ||||||||
Protein Properties | Length: 361aa MW: 40234 Da PI: 4.9379 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.1 | 9e-29 | 118 | 178 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 ldDgy+WrKYGqK++ g++fpr+Y+rCt++ gC ++k+v+rs+edp++ e+tY+g+H++ GSVIVT01027069001 118 LDDGYSWRKYGQKDILGANFPRGYFRCTHRhaqGCLATKQVQRSDEDPSIYEVTYRGRHTC 178 59***************************99999*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-28 | 109 | 178 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.527 | 113 | 176 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.15E-26 | 115 | 178 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-42 | 118 | 180 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.1E-27 | 119 | 178 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MEMAREWEHN TLINELTQGR EMANQLKNHL TPSSSRETRE FLVEKILSSY EKALSMLKCG 60 GFVSELPHSL PGSSPRSEGS NQDFKDQAGK DVFKKRKTLP RWTEQVRVTI GTVPEGPLDD 120 GYSWRKYGQK DILGANFPRG YFRCTHRHAQ GCLATKQVQR SDEDPSIYEV TYRGRHTCIQ 180 GSRVAPASEA EQIVSGFGTG LKVKTEDLDS REKIFPSFSF PLSDSETVDK IFAESMIENS 240 LMGGFSPSFL SPATSESNYF PVSPCQMNSF GMGHSVYTTE SDLTENISAP TSVTNSPIGD 300 YSFPLDPIQD SIPSETEPIK MVLQSLPWCC PREFSFSIDS FLNIVSLSID SFSLNYLQSD 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-22 | 118 | 178 | 8 | 68 | OsWRKY45 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.10486 | 0.0 | flower| inflorescence| leaf| pedicel |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00112 | ampDAP | Transfer from AT2G46400 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY509152 | 0.0 | AY509152.1 Vitis aestivalis putative WRKY transcription factor 30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002281031.1 | 0.0 | PREDICTED: probable WRKY transcription factor 46 | ||||
TrEMBL | F6I6B1 | 0.0 | F6I6B1_VITVI; Uncharacterized protein | ||||
STRING | VIT_15s0046g01140.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 3e-52 | WRKY DNA-binding protein 46 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01027069001 |