PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027069001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 361aa    MW: 40234 Da    PI: 4.9379
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027069001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.19e-29118178158
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                        ldDgy+WrKYGqK++ g++fpr+Y+rCt++   gC ++k+v+rs+edp++ e+tY+g+H++
  GSVIVT01027069001 118 LDDGYSWRKYGQKDILGANFPRGYFRCTHRhaqGCLATKQVQRSDEDPSIYEVTYRGRHTC 178
                        59***************************99999*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-28109178IPR003657WRKY domain
PROSITE profilePS5081122.527113176IPR003657WRKY domain
SuperFamilySSF1182909.15E-26115178IPR003657WRKY domain
SMARTSM007741.0E-42118180IPR003657WRKY domain
PfamPF031064.1E-27119178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEMAREWEHN TLINELTQGR EMANQLKNHL TPSSSRETRE FLVEKILSSY EKALSMLKCG  60
GFVSELPHSL PGSSPRSEGS NQDFKDQAGK DVFKKRKTLP RWTEQVRVTI GTVPEGPLDD  120
GYSWRKYGQK DILGANFPRG YFRCTHRHAQ GCLATKQVQR SDEDPSIYEV TYRGRHTCIQ  180
GSRVAPASEA EQIVSGFGTG LKVKTEDLDS REKIFPSFSF PLSDSETVDK IFAESMIENS  240
LMGGFSPSFL SPATSESNYF PVSPCQMNSF GMGHSVYTTE SDLTENISAP TSVTNSPIGD  300
YSFPLDPIQD SIPSETEPIK MVLQSLPWCC PREFSFSIDS FLNIVSLSID SFSLNYLQSD  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-22118178868OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.104860.0flower| inflorescence| leaf| pedicel
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5091520.0AY509152.1 Vitis aestivalis putative WRKY transcription factor 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281031.10.0PREDICTED: probable WRKY transcription factor 46
TrEMBLF6I6B10.0F6I6B1_VITVI; Uncharacterized protein
STRINGVIT_15s0046g01140.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.13e-52WRKY DNA-binding protein 46