PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01026965001
Common NameLOC100256849, VIT_15s0046g02190
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 349aa    MW: 37990.1 Da    PI: 6.1042
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01026965001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.7e-31167225259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp+++++tY+ eHnh+
  GSVIVT01026965001 167 SDMWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPDMFIVTYTAEHNHP 225
                        79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-31156227IPR003657WRKY domain
PROSITE profilePS5081134.762161227IPR003657WRKY domain
SuperFamilySSF1182901.83E-26164227IPR003657WRKY domain
SMARTSM007749.9E-37166226IPR003657WRKY domain
PfamPF031068.4E-26168225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEEDWDLQAV VRGCATATVA SAATTTTTAT TSDAAALDLH RSSCFSPFDV VEQAHHHDGH  60
LLCFPDPFET RREAFVEELH DLCRPFFPKS QPISPRTIPI SSLSVLGGGF SDQTHQIQQQ  120
QKQDPPPSKH SHASSVPSTT HSQSPRSKRR KNQMKKVCHI PAEGLSSDMW AWRKYGQKPI  180
KGSPYPRGYY RCSSSKGCLA RKQVERNRSD PDMFIVTYTA EHNHPMPTHR NSLAGSTRQK  240
PVTPPAAATT TASADAVKPS AKPACSSPAT SADDELVQQS TSVQSKDLVE DEEDDELGFS  300
DTAVDDDFFM GLEELAEQVT GDCFPDHFPP SFPIPWLANN AATAAGGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-23151228280Disease resistance protein RRS1
5w3x_D5e-23151228280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4427470.0AM442747.2 Vitis vinifera contig VV78X187875.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276925.10.0PREDICTED: WRKY transcription factor 22
TrEMBLA0A438JM470.0A0A438JM47_VITVI; WRKY transcription factor 22
TrEMBLD7UCE20.0D7UCE2_VITVI; Uncharacterized protein
STRINGVIT_15s0046g02190.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-75WRKY family protein