PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01026868001
Common NameLOC100246583, VIT_15s0046g03190
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 303aa    MW: 33369.5 Da    PI: 7.3402
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01026868001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.6e-181461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++lvd++++ G g+W++ ++  g+ R++k+c++rw +yl
  GSVIVT01026868001 14 KGPWTPEEDQILVDYINKNGHGSWRSLPKNAGLLRCGKSCRLRWTNYL 61
                       79******************************99************97 PP
2Myb_DNA-binding48.91.5e-1567112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++Tt+E++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  GSVIVT01026868001  67 RGPFTTDEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112
                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.691961IPR017930Myb domain
SuperFamilySSF466892.26E-3011108IPR009057Homeodomain-like
SMARTSM007174.5E-141363IPR001005SANT/Myb domain
PfamPF002492.7E-161461IPR001005SANT/Myb domain
CDDcd001671.14E-111661No hitNo description
PROSITE profilePS5129424.20362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.5E-2565116IPR009057Homeodomain-like
SMARTSM007177.2E-1466114IPR001005SANT/Myb domain
PfamPF002493.8E-1467112IPR001005SANT/Myb domain
CDDcd001671.16E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRTPCCDKR GLKKGPWTPE EDQILVDYIN KNGHGSWRSL PKNAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF TTDEEKLVIQ LHGILGNRWA AIASQLPGRT DNEIKNLWNT HLKKRLLGMG  120
LDPQTHEPSA TSCGPIAKPP SSPSTRHMAQ WESARLEAEA RLSRESLLSN PPPPPLGRNN  180
DSDYFLRLWN SEVGESFRNK GQKPTCQSPV SQASSSTKCG SVSGVTTMET CPTVSNKIED  240
TPQNAMAGSD CSSTNELEDS SDTALQLLFD FPVNNDMSFL EGNLDTYPTF PAMLSESSFI  300
SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29121165108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.295580.0inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}.
UniprotTISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4868550.0AM486855.2 Vitis vinifera contig VV78X277583.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661750.10.0PREDICTED: myb-related protein 308
RefseqXP_010661751.10.0PREDICTED: myb-related protein 308
SwissprotQ9M2D91e-129MYB17_ARATH; Transcription factor MYB17
TrEMBLD7UC600.0D7UC60_VITVI; Uncharacterized protein
STRINGVIT_15s0046g03190.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-125myb domain protein 17