PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01026649001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

Nin-like

Protein Properties

Length: 161aa MW: 19169.5 Da PI: 10.446

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01026649001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.3	9.8e-26	12	61	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i ledl kyF+ p+ +A+++L+++lTvLKr+CR++GI+RWPhRkiksl GSVIVT01026649001 12 AKIALEDLVKYFDVPMVEASRNLKIGLTVLKRKCREFGIPRWPHRKIKSL 61 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.247	1	81	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-21	14	61	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MKKKRAASED VAKIALEDLV KYFDVPMVEA SRNLKIGLTV LKRKCREFGI PRWPHRKIKS 60 LDGLIRDLQE EAERQQLENK AAAMAVLKRQ RMLETEKECI EQRPFMEIED ETKRFRQDVF 120 KRRHRARALK NRDCFMFKQA IICSWLLSFY LFTFSKTLQE *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM466974	1e-111	AM466974.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X055211.2, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019074769.1	8e-88	PREDICTED: protein RKD5
Swissprot	O81791	1e-56	RKD5_ARATH; Protein RKD5
TrEMBL	F6I0K1	3e-89	F6I0K1_VITVI; Uncharacterized protein
STRING	VIT_04s0044g00060.t01	5e-90	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	6e-59	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	GSVIVT01026649001

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]